Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0028
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.1  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 432
           +A NG  +D+ +  +   P G Y      +  +G  TG++    +D   ++ ++G+ E
Sbjct: 423 VAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANI-EIGAGE 479


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 457 LPILWLKLFHLNPDR*HRRIHRFLTQQPAL 368
           L + W   +  N +R    +H+F T QP L
Sbjct: 165 LSVFWGSAWQWNEERKQYYLHQFATGQPDL 194


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 358 GLATGQVAASENDEYDDVSDLGSDEIASAIEWEE 459
           G+A+ +V +  ND  + +      E+   + W+E
Sbjct: 355 GIASAKVRSMFNDSGNPILKAKPSEVVQILGWKE 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,998
Number of Sequences: 438
Number of extensions: 3243
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)