Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0028
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein...    82   3e-16
At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein...    79   2e-15
At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein...    79   4e-15
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein...    64   1e-10
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    44   1e-04
At5g28320.1 68418.m03438 expressed protein This is likely a pseu...    29   3.8  
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    28   6.6  
At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    27   8.7  

>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
           similar to SP|O00264 Membrane associated progesterone
           receptor component (mPR) {Homo sapiens}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 233

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
           L+A+ G I+DV++ + FYGPGGPY+ FAGKDA+R LA  +++  + D   D+S LG+ E+
Sbjct: 89  LMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALA--KMSFEDQDLTGDISGLGAFEL 146

Query: 436 ASAIEWEEQFRGKYGIVGRLLKL-GERQKITVMMRAKT 546
            +  +WE +F  KY  VG + K  GE ++ +    AKT
Sbjct: 147 EALQDWEYKFMSKYVKVGTIQKKDGEGKESSEPSEAKT 184


>At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein
           similar to SP|P70580 Membrane associated progesterone
           receptor component 1 {Rattus norvegicus}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 220

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 42/102 (41%), Positives = 63/102 (61%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
           L+A+   I+DVT+ + FYGPGGPY+ FAGKDA+R LA  +++  E D   DVS LG  E+
Sbjct: 93  LMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALA--KMSFEEKDLTWDVSGLGPFEL 150

Query: 436 ASAIEWEEQFRGKYGIVGRLLKLGERQKITVMMRAKTKNLSK 561
            +  +WE +F  KY  VG  +K+   +  T  +   T+N+ +
Sbjct: 151 DALQDWEYKFMSKYAKVG-TVKVAGSEPETASVSEPTENVEQ 191


>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
           similar to SP|P70580 Membrane associated progesterone
           receptor component 1 {Rattus norvegicus}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 100

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = +1

Query: 259 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIA 438
           +A+ G +FDVT GK FYG GG YS FAGKDA+R L  G+++ +E D    +  L   EI 
Sbjct: 22  VAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRAL--GKMSKNEEDVSPSLEGLTEKEIN 79

Query: 439 SAIEWEEQFRGKYGIVGRLL 498
           +  +WE +F  KY +VGR++
Sbjct: 80  TLNDWETKFEAKYPVVGRVV 99


>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
           similar to SP|O15173 Membrane associated progesterone
           receptor component 2 (Steroid receptor protein DG6)
           {Homo sapiens}; contains Pfam profile PF00173:
           Heme/Steroid binding domain
          Length = 245

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 31/81 (38%), Positives = 46/81 (56%)
 Frame = +1

Query: 256 LLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEI 435
           LL + G +FDVT+GK  YG GG Y+ FAG+DA+R   +G      +   D +  L S E+
Sbjct: 60  LLGILGSVFDVTKGKFHYGSGGGYNHFAGRDASRAFVSGNFTG--DGLTDSLQGLSSSEV 117

Query: 436 ASAIEWEEQFRGKYGIVGRLL 498
            S ++W   +   Y  VG+L+
Sbjct: 118 KSIVDWRGFYSRTYTPVGKLV 138


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
            SP|P35207 Antiviral protein SKI2 {Saccharomyces
            cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 1347

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +1

Query: 274  IIFDVTR---GKRFYGP-GGPYSAFAGKDATRGL-ATGQVAASENDEYDDVSDLGSDEIA 438
            ++FD  R   GK F     G Y+  AG+   RGL  TG V     DE  D SDL    + 
Sbjct: 750  VVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVG 809

Query: 439  SAIEWEEQFRGKYGIVGRLLKLGERQKITVMMR 537
            SA   E QFR  Y ++  LL++ E  K+  M++
Sbjct: 810  SATRLESQFRLTYIMILHLLRV-EELKVEDMLK 841


>At5g28320.1 68418.m03438 expressed protein This is likely a
           pseudogene.
          Length = 967

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 391 FLTQQPALWLSLLWRLYQQTPSMGLPVHKIS 299
           FLT++  L LS+L+++Y      G P H+I+
Sbjct: 812 FLTEKSLLMLSVLFKVYGAMVDSGFPEHEIA 842


>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 319 GPYSAFAGKDATRGLATGQVAASENDEYDDVSDLG-SDEIASAIEWEEQFRGKY 477
           GP SA A   +T   ATG    S+ND+ DD  DL  SDE     E+ E ++  Y
Sbjct: 439 GPTSASA-TGSTSASATGPATGSDNDQSDD-DDLSISDE-----EFAENYKALY 485


>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 563 GLLRFLVFALIITVIFWRSPNLRRRPTMPYFPLNCSS---HSMAEAISSEPRSLTSSYS 396
           GL+ F  FA+I+ ++ ++    RR+      P + SS    S     S E RS+T ++S
Sbjct: 210 GLILFTTFAIILWLLVYKRSKKRRKSRKVSNPASSSSVVPPSWKIFTSEELRSMTKNFS 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,666
Number of Sequences: 28952
Number of extensions: 250566
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)