Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0027
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 81 8e-16
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 37 0.013
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 37 0.017
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38... 32 0.49
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300... 29 2.6
03_03_0278 - 16126803-16129049 29 3.5
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 29 3.5
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 29 3.5
03_02_0036 + 5182345-5183511 29 4.6
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 28 6.1
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 28 8.0
07_01_0084 + 657846-658538,660652-661920 28 8.0
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/81 (45%), Positives = 50/81 (61%)
Frame = +2
Query: 8 KPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
K N LFWSP G+FIV A L G LEF + ++ M +H+ + I WDPTGRY+ +
Sbjct: 515 KQANALFWSPGGRFIVFAGLKGFNGQLEFYNVDELETMATGEHFMATDIMWDPTGRYLAS 574
Query: 188 GVSSXKCKMDCGYYIWSFQGK 250
V+S +M+ G+ IWSF GK
Sbjct: 575 AVTSVH-EMENGFQIWSFSGK 594
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/124 (26%), Positives = 58/124 (46%)
Frame = +1
Query: 145 VWDRMGSNRTLCSDWCVFXQM*NGLRLLHLVIPGQDTRRVMKEGFAQFHWRPRPPTLLSX 324
+WD G R L S +M NG ++ G+ +V K+ F QF WRPRPP+LL+
Sbjct: 564 MWDPTG--RYLASAVTSVHEMENGFQIWSF--SGKQLYKVSKDHFFQFLWRPRPPSLLTP 619
Query: 325 XXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPR 504
Y ++E +D+ ++ S++ +R + +++ + Q E++P
Sbjct: 620 EKEDEIAKNLRKYSKKYEQEDQDAFNQLSEQERKRRKQLQEEWEGWVAKWKQLHEEERPY 679
Query: 505 RPNL 516
R L
Sbjct: 680 RMEL 683
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 17 NHLFWSPSGQFIVLANLGLTGGALEF-LDTNDFTIMNVADHYQ-MSGIEWDPTGRYVVT 187
N L WSP GQF LA GL + + DT + +H Q + + W P GRY+VT
Sbjct: 210 NALCWSPDGQF--LAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVCSLCWSPNGRYLVT 266
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 29 WSPSGQFIVLANLGLTGGALEFLDTNDFTIMN-VADHYQMSGIEWDPTGRYVVTGVSS 199
WSPSG +++ A L G +TN +T + + +SG WDP GR V+ S+
Sbjct: 238 WSPSGDYLLTAKLD---GTFHLWETNTWTSEPWSSSNGYVSGANWDPEGRIVLLSFSN 292
>08_01_0058 +
388989-389102,389226-389337,389457-389483,389787-389859,
389958-390061,390144-390358,390429-390528,390739-390805,
391628-391716,391810-391948,392057-392157,392921-393088,
393302-393510
Length = 505
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 23 LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSX 202
L WS G F+V A++ + + + + + HY + G+ WDP G+Y+ + S
Sbjct: 118 LQWSQDGAFLVSASVDNSCIVWDAIKGSVQQKLEGHLHY-VQGVAWDPLGQYIASLSSDR 176
Query: 203 KCKM 214
C++
Sbjct: 177 TCRI 180
>08_01_0339 -
3003626-3004070,3004467-3004636,3004907-3005020,
3005592-3005704,3005848-3005926
Length = 306
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 367 SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 495
SQ + ++S ++K E KF E +E K+QEW Q
Sbjct: 255 SQLLDNNTATMKESSSTDISKSVENYNKFKEEQELKLQEWLRQ 297
>03_03_0278 - 16126803-16129049
Length = 748
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 286 FHWRPRPPTLLSXXXXXXXXXXXXXYYSQFES--KDRMRSSKASKELVAKRTEQMKKFTE 459
F W+PRPPT +S + +S KD+++ + + VA ++ KK
Sbjct: 401 FSWKPRPPTRISLVKTFTQFDVRGILMEKAKSDLKDKLKEMQTKRSQVAANGKKNKK-NM 459
Query: 460 YRES 471
++ES
Sbjct: 460 FKES 463
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 155 EWDPTGRYVVTGVSSXKCKMDCGYYIWSFQGKI 253
EW P GR+ +T ++ + ++D G I+ G +
Sbjct: 288 EWSPDGRHFMTATTAPRLQIDNGIKIFDHNGSL 320
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 385 DRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRP 510
D SSK S LV K E K+ + ++ +EW P +P
Sbjct: 504 DTYNSSKRSVSLVQKHRESKKEKKKQKQRDKEEWEGNHPWKP 545
>03_02_0036 + 5182345-5183511
Length = 388
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 120 IMVKSFVSKNSNAPPVSPRLARTMNCPDGDQKRWLNGFL 4
+++ S V+ APPV+ LA + P G +W++ L
Sbjct: 243 VLICSVVAAAIAAPPVAAALAAAASIPVGSMGKWIDSLL 281
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 120 IMVKSFVSKNSNAPPVSPRLARTMNCPDGDQKRWLNGFL 4
++V S V+ APPV+ LA + P G +W++ L
Sbjct: 233 LLVCSVVAAAIAAPPVAAALAAAASMPVGSAGKWMDSLL 271
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +1
Query: 385 DRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQK 498
D S + ++++ + +++ + E R +++EW EQK
Sbjct: 11 DEEESERRRQKMIEEEKKRLDEEMELRRRRVKEWQEQK 48
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 55 PGQPWTDWWCIGVLG 99
P QPW WW G+ G
Sbjct: 344 PLQPWKPWWATGIYG 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,602,069
Number of Sequences: 37544
Number of extensions: 333274
Number of successful extensions: 1014
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -