Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0027
(691 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY122066-1|AAM52578.1| 690|Drosophila melanogaster AT09438p pro... 107 1e-23
AE013599-2499|AAG22261.1| 690|Drosophila melanogaster CG4878-PB... 107 1e-23
AE013599-2498|AAF57842.1| 690|Drosophila melanogaster CG4878-PA... 107 1e-23
AY051717-1|AAK93141.1| 638|Drosophila melanogaster LD24903p pro... 42 8e-04
AE014296-3624|AAF51786.1| 638|Drosophila melanogaster CG7414-PA... 42 8e-04
AF367178-1|AAK31264.1| 747|Drosophila melanogaster chromatin as... 34 0.16
AE013599-1108|AAF58788.1| 747|Drosophila melanogaster CG12892-P... 34 0.16
U07652-1|AAA20518.1| 390|Drosophila melanogaster La/SS-B protein. 30 3.4
L32988-1|AAA21776.1| 390|Drosophila melanogaster La ribonucleop... 30 3.4
AY075257-1|AAL68124.1| 390|Drosophila melanogaster AT22034p pro... 30 3.4
AE014134-3230|AAN11073.1| 390|Drosophila melanogaster CG10922-P... 30 3.4
AE014134-3229|AAF53885.1| 390|Drosophila melanogaster CG10922-P... 30 3.4
AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-P... 29 7.9
>AY122066-1|AAM52578.1| 690|Drosophila melanogaster AT09438p
protein.
Length = 690
Score = 107 bits (258), Expect = 1e-23
Identities = 51/85 (60%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLD-TNDFTIMNVADHYQMSGIEWDPTGRY 178
E+K HLFWSP GQFIV+ANL T G EF+D TND+ I DH++ S +EWDPTGRY
Sbjct: 489 EKKSCTHLFWSPRGQFIVMANL--TMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRY 546
Query: 179 VVTGVSSXKCKMDCGYYIWSFQGKI 253
VVTGVSS K K D G+ +++FQG+I
Sbjct: 547 VVTGVSSWKVKEDTGFNMYTFQGRI 571
Score = 91.1 bits (216), Expect = 1e-18
Identities = 42/88 (47%), Positives = 55/88 (62%)
Frame = +1
Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELV 423
G+ +R + + F QF WRPRPPTLLS YY+ FE KDR+R ++ASKEL+
Sbjct: 569 GRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELL 628
Query: 424 AKRTEQMKKFTEYRESKIQEWNEQKPRR 507
KR++ + F EYR +I EW EQK RR
Sbjct: 629 EKRSQLRETFMEYRNKRIAEWAEQKSRR 656
>AE013599-2499|AAG22261.1| 690|Drosophila melanogaster CG4878-PB,
isoform B protein.
Length = 690
Score = 107 bits (258), Expect = 1e-23
Identities = 51/85 (60%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLD-TNDFTIMNVADHYQMSGIEWDPTGRY 178
E+K HLFWSP GQFIV+ANL T G EF+D TND+ I DH++ S +EWDPTGRY
Sbjct: 489 EKKSCTHLFWSPRGQFIVMANL--TMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRY 546
Query: 179 VVTGVSSXKCKMDCGYYIWSFQGKI 253
VVTGVSS K K D G+ +++FQG+I
Sbjct: 547 VVTGVSSWKVKEDTGFNMYTFQGRI 571
Score = 91.1 bits (216), Expect = 1e-18
Identities = 42/88 (47%), Positives = 55/88 (62%)
Frame = +1
Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELV 423
G+ +R + + F QF WRPRPPTLLS YY+ FE KDR+R ++ASKEL+
Sbjct: 569 GRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELL 628
Query: 424 AKRTEQMKKFTEYRESKIQEWNEQKPRR 507
KR++ + F EYR +I EW EQK RR
Sbjct: 629 EKRSQLRETFMEYRNKRIAEWAEQKSRR 656
>AE013599-2498|AAF57842.1| 690|Drosophila melanogaster CG4878-PA,
isoform A protein.
Length = 690
Score = 107 bits (258), Expect = 1e-23
Identities = 51/85 (60%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLD-TNDFTIMNVADHYQMSGIEWDPTGRY 178
E+K HLFWSP GQFIV+ANL T G EF+D TND+ I DH++ S +EWDPTGRY
Sbjct: 489 EKKSCTHLFWSPRGQFIVMANL--TMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRY 546
Query: 179 VVTGVSSXKCKMDCGYYIWSFQGKI 253
VVTGVSS K K D G+ +++FQG+I
Sbjct: 547 VVTGVSSWKVKEDTGFNMYTFQGRI 571
Score = 91.1 bits (216), Expect = 1e-18
Identities = 42/88 (47%), Positives = 55/88 (62%)
Frame = +1
Query: 244 GQDTRRVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELV 423
G+ +R + + F QF WRPRPPTLLS YY+ FE KDR+R ++ASKEL+
Sbjct: 569 GRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELL 628
Query: 424 AKRTEQMKKFTEYRESKIQEWNEQKPRR 507
KR++ + F EYR +I EW EQK RR
Sbjct: 629 EKRSQLRETFMEYRNKRIAEWAEQKSRR 656
>AY051717-1|AAK93141.1| 638|Drosophila melanogaster LD24903p
protein.
Length = 638
Score = 41.9 bits (94), Expect = 8e-04
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +2
Query: 11 PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
P N +++P G I LA G GA+E D + + + EW P G + VT
Sbjct: 332 PRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTA 391
Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
++ + ++ G+ ++ + G +
Sbjct: 392 TTAPRLRISNGFKVYHYSGAL 412
>AE014296-3624|AAF51786.1| 638|Drosophila melanogaster CG7414-PA
protein.
Length = 638
Score = 41.9 bits (94), Expect = 8e-04
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +2
Query: 11 PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
P N +++P G I LA G GA+E D + + + EW P G + VT
Sbjct: 332 PRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTA 391
Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
++ + ++ G+ ++ + G +
Sbjct: 392 TTAPRLRISNGFKVYHYSGAL 412
>AF367178-1|AAK31264.1| 747|Drosophila melanogaster chromatin
assembly factor-1 p105subunit protein.
Length = 747
Score = 34.3 bits (75), Expect = 0.16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 5 RKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVV 184
R+ L W+P+ QF+V ++ T + I++ Y + G+ WDP +Y+
Sbjct: 133 REDIYDLSWAPNSQFLVSGSVDNTAMLWDVHSGKSLAILDDHKGY-VQGVAWDPCNQYIA 191
Query: 185 T 187
T
Sbjct: 192 T 192
>AE013599-1108|AAF58788.1| 747|Drosophila melanogaster CG12892-PA
protein.
Length = 747
Score = 34.3 bits (75), Expect = 0.16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 5 RKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVV 184
R+ L W+P+ QF+V ++ T + I++ Y + G+ WDP +Y+
Sbjct: 133 REDIYDLSWAPNSQFLVSGSVDNTAMLWDVHSGKSLAILDDHKGY-VQGVAWDPCNQYIA 191
Query: 185 T 187
T
Sbjct: 192 T 192
>U07652-1|AAA20518.1| 390|Drosophila melanogaster La/SS-B protein.
Length = 390
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
FE+KD+ ++ +++V K E ++K+ +Y + K +E+ ++ +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248
>L32988-1|AAA21776.1| 390|Drosophila melanogaster La
ribonucleoprotein protein.
Length = 390
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
FE+KD+ ++ +++V K E ++K+ +Y + K +E+ ++ +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248
>AY075257-1|AAL68124.1| 390|Drosophila melanogaster AT22034p
protein.
Length = 390
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
FE+KD+ ++ +++V K E ++K+ +Y + K +E+ ++ +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248
>AE014134-3230|AAN11073.1| 390|Drosophila melanogaster CG10922-PB,
isoform B protein.
Length = 390
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
FE+KD+ ++ +++V K E ++K+ +Y + K +E+ ++ +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248
>AE014134-3229|AAF53885.1| 390|Drosophila melanogaster CG10922-PA,
isoform A protein.
Length = 390
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 FESKDRMRSSKASKELVAKRTEQMKKF-TEYRESKIQEWNEQKPRRPN 513
FE+KD+ ++ +++V K E ++K+ +Y + K +E+ ++ +R N
Sbjct: 201 FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKN 248
>AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-PA
protein.
Length = 1833
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 382 KDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQK 498
+ R+ SSK ELV++R+ K +E +SK+ E+ E++
Sbjct: 1339 ESRLESSKIKTELVSERSANEIKISE-MQSKLNEFEEER 1376
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,892,466
Number of Sequences: 53049
Number of extensions: 554674
Number of successful extensions: 1424
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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