Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0027
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 87 1e-17
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 86 2e-17
At1g73180.1 68414.m08469 eukaryotic translation initiation facto... 48 6e-06
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 34 0.077
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 34 0.077
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 34 0.077
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 30 1.7
At1g72650.2 68414.m08402 myb family transcription factor contain... 30 1.7
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 2.2
At1g49015.1 68414.m05496 eukaryotic translation initiation facto... 29 3.8
At2g25580.1 68415.m03064 pentatricopeptide (PPR) repeat-containi... 28 6.7
At2g46640.1 68415.m05818 hypothetical protein and genefinder; e... 27 8.9
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 86.6 bits (205), Expect = 1e-17
Identities = 39/80 (48%), Positives = 53/80 (66%)
Frame = +2
Query: 8 KPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
K N LFWSP+G++I+LA L G LEF + ++ M A+H+ + IEWDPTGRYV T
Sbjct: 510 KQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVAT 569
Query: 188 GVSSXKCKMDCGYYIWSFQG 247
V+S +M+ G+ IWSF G
Sbjct: 570 AVTSVH-EMENGFTIWSFNG 588
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 259 RVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTE 438
R++K+ F Q WRPRPP+ L+ Y ++E++D+ S L + E
Sbjct: 593 RILKDHFFQLAWRPRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQ----DVSLLLSEQDRE 648
Query: 439 QMKKFTEYRESKIQEW----NEQKPRRPNL 516
+ K E E + +W E+K R NL
Sbjct: 649 KRKALKEEWEKWVMQWKSLHEEEKLVRQNL 678
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 85.8 bits (203), Expect = 2e-17
Identities = 38/82 (46%), Positives = 54/82 (65%)
Frame = +2
Query: 8 KPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
K N LFWSP+G++I+LA L G LEF + ++ M A+H+ + IEWDPTGRYV T
Sbjct: 511 KQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVAT 570
Query: 188 GVSSXKCKMDCGYYIWSFQGKI 253
V++ +M+ G+ IWSF G +
Sbjct: 571 SVTTVH-EMENGFTIWSFNGNM 591
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/123 (24%), Positives = 52/123 (42%)
Frame = +1
Query: 148 WDRMGSNRTLCSDWCVFXQM*NGLRLLHLVIPGQDTRRVMKEGFAQFHWRPRPPTLLSXX 327
WD G R + + +M NG + G R++K+ F Q WRPRP + L+
Sbjct: 561 WDPTG--RYVATSVTTVHEMENGFTIWSF--NGNMVYRILKDHFFQLAWRPRPASFLTAE 616
Query: 328 XXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRR 507
Y ++E++D+ S S++ KR +++ ++ E+K R
Sbjct: 617 KEEEIAKNLRNYSKRYEAEDQDVSLLLSEQDREKRRALNEEWQKWVMQWKSLHEEEKLVR 676
Query: 508 PNL 516
NL
Sbjct: 677 QNL 679
>At1g73180.1 68414.m08469 eukaryotic translation initiation
factor-related similar to eukaryotic translation
initiation factor 2A (GI:21956484) [Homo sapiens];
similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
(Swiss-Prot:P55884) [Homo sapiens]
Length = 513
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 PFNHLFWSPSGQFIVLANLGLTGGALEFLDT-NDFTIMNVADHYQMSGIEWDPTGRYVVT 187
P+N L W+P G+ + +A G G + F D N + + + ++ EW P GRY +T
Sbjct: 315 PYNTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTS-EWSPDGRYFLT 373
Query: 188 GVSSXKCKMDCGYYIWSFQGK 250
++ + ++D G I+++ GK
Sbjct: 374 ASTAPRRQIDNGMKIFNYDGK 394
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 5 RKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVAD---HYQMSGIEWDPTGR 175
RK L WSP +++ G + D N ++ + D HY + G+ WDP +
Sbjct: 53 RKDVLDLQWSPDDAYLIS---GSVDNSCIIWDVNKGSVHQILDAHCHY-VQGVAWDPLAK 108
Query: 176 YVVTGVSSXKCKM 214
YV + S C++
Sbjct: 109 YVASLSSDRTCRI 121
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 5 RKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVAD---HYQMSGIEWDPTGR 175
RK L WSP +++ G + D N ++ + D HY + G+ WDP +
Sbjct: 112 RKDVLDLQWSPDDAYLIS---GSVDNSCIIWDVNKGSVHQILDAHCHY-VQGVAWDPLAK 167
Query: 176 YVVTGVSSXKCKM 214
YV + S C++
Sbjct: 168 YVASLSSDRTCRI 180
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 5 RKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVAD---HYQMSGIEWDPTGR 175
RK L WSP +++ G + D N ++ + D HY + G+ WDP +
Sbjct: 112 RKDVLDLQWSPDDAYLIS---GSVDNSCIIWDVNKGSVHQILDAHCHY-VQGVAWDPLAK 167
Query: 176 YVVTGVSSXKCKM 214
YV + S C++
Sbjct: 168 YVASLSSDRTCRI 180
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 29 WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADH-YQMSGIEWDPTGRYVVTGVSSXK 205
WSPSGQ + A+ T G + + I + H ++ + W+ +G + T
Sbjct: 82 WSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLAT------ 135
Query: 206 CKMDCGYYIW 235
C D +IW
Sbjct: 136 CSRDKSVWIW 145
>At1g72650.2 68414.m08402 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 367 SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRPNL 516
SQ ES + + S + V T+Q+K +EY E +Q+ EQ+ R N+
Sbjct: 115 SQIESSEAINSGLLHSDNVQPYTDQVKSRSEYNEEMLQK-VEQEERLENV 163
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 364 YSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQ 480
Y F ++ +R AS+E +AKR E + +RE K Q
Sbjct: 69 YESFPTETSIRYFHASRETLAKRKEDADRLLSHRERKKQ 107
>At1g49015.1 68414.m05496 eukaryotic translation initiation
factor-related contains similarity to eukaryotic
translation initiation factor 3 subunit 9 SP:Q9C5Z1
Length = 227
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 8 KPFNHLFWSPSGQFIVLANLGLTGGALEFLDT 103
K + LFWSP G+ IVLA L A+ T
Sbjct: 188 KEADALFWSPRGKHIVLAGLKAASMAISSFST 219
>At2g25580.1 68415.m03064 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 567
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 126 WLIIIRCLGSNGIQQDAM 179
W IIIRC NG +DA+
Sbjct: 275 WCIIIRCFAKNGFGEDAI 292
>At2g46640.1 68415.m05818 hypothetical protein and genefinder;
expression supported by MPSS
Length = 310
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 397 SSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRPNLE 519
+++A E KRT + F E + W+ +KP PNL+
Sbjct: 131 AAEAEIEPQKKRTTLAELFMEDHDKGYDTWHCKKPNNPNLD 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,925,187
Number of Sequences: 28952
Number of extensions: 262591
Number of successful extensions: 792
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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