Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0026
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1BFR2 Cluster: Outer membrane autotransporter barrel d...    36   1.2  
UniRef50_Q5KBQ2 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  

>UniRef50_A1BFR2 Cluster: Outer membrane autotransporter barrel
           domain; n=2; Chlorobium|Rep: Outer membrane
           autotransporter barrel domain - Chlorobium
           phaeobacteroides (strain DSM 266)
          Length = 1769

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 25/72 (34%), Positives = 33/72 (45%)
 Frame = -3

Query: 538 NLTNRHFKYTRA*SIHR*GV*NNTSNSTMNYFL*TDNYLKLVGTFTKTIYYNMSFLFTLN 359
           +L+N  F   +  +I   G+ NNT + T NY L     L   GT T     N S  FT+N
Sbjct: 118 SLSNNAFSTAKI-NIGSTGILNNTGSVTNNYELNNSGLLTNSGTLTNNFLLNNSGSFTIN 176

Query: 358 GGRGSTQGSAAM 323
            G GS   S  +
Sbjct: 177 NG-GSFNNSGVL 187


>UniRef50_Q5KBQ2 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 2021

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -3

Query: 649 LNLNPDLAEFSSNVFTES*KRTDRXI 572
           L+L+P++ EF   +F+ES KRTDR +
Sbjct: 58  LSLDPEMEEFEEELFSESAKRTDRMV 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,048,495
Number of Sequences: 1657284
Number of extensions: 12749825
Number of successful extensions: 28159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28157
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)