Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0026
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    28   1.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.6  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    26   5.9  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.9  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -3

Query: 472 NTSNSTMNYFL*--TDNYLKLVGTFTKTIYYNMSFLF-TLNGGRGSTQGSAAMGPRVHAE 302
           N+    ++Y+L   T +Y  LV + TKT       L  +  GG+  ++GSA M     A+
Sbjct: 281 NSKECVLHYYLTKRTTDYRALVASATKTKGRRRKKLLPSQRGGKKKSKGSALMVDIEAAD 340

Query: 301 VPATRDAARGHFRDTPNTS 245
           +  T +     F++   T+
Sbjct: 341 INKTEENINNQFQEASVTA 359


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 409  YPPILNNYLFKESSSSYYLMCCFRHLICVS--TTHEYT*NVCLLNLLFIWYDKYKDQXXD 582
            Y  +L N+ F ES    +    F  LI  S  TT +   N  L N+L+IW + YKD    
Sbjct: 1105 YQILLQNHEFSESCYKRH----FDRLIWQSLDTTPD---NKLLKNILYIWLNDYKDSDIH 1157

Query: 583  RFVS 594
             +V+
Sbjct: 1158 SWVN 1161


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 528 TDILSILVRSRYTDKVSETTH 466
           T  LS+LVR  Y D+V + TH
Sbjct: 253 TRSLSLLVRQGYLDRVKDDTH 273


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 379 SFLFTLNGG-RGSTQGSAAMGPRVHAEVPATRDAARGHFRD 260
           S L  LN G   S Q  +  GP+ +A   ++ DA    FRD
Sbjct: 54  SLLSLLNAGLNASNQSPSNSGPKYYASHSSSTDALLQAFRD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,387
Number of Sequences: 5004
Number of extensions: 55169
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)