Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0026
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.68 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.68 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.6  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.4  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 466 SNSTMNYFL*TDNYLKLVGTFTKTIYYNMSFL 371
           S+ + NY    +NY KL     K +YYN++++
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 466 SNSTMNYFL*TDNYLKLVGTFTKTIYYNMSFL 371
           S+ + NY    +NY KL     K +YYN++++
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 466 SNSTMNYFL*TDNYLKLVGTFTKTIYYNMSFL 371
           S+ + NY    +NY KL     + +YYN++++
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYRKLYYNINYI 114


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 344 TPPASIQSK*KRHVVINSLCK 406
           TP  SI+   KRHV+   +C+
Sbjct: 23  TPTMSIKCNCKRHVIKPHICR 43


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 365 FEWRPGEYPGV 333
           F+W P EY GV
Sbjct: 82  FQWDPAEYGGV 92


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -3

Query: 433 DNYLKLVGTFTKTIYYNMSFL 371
           +NY      + K +YYN++++
Sbjct: 95  NNYNNNYNNYNKKLYYNINYI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,332
Number of Sequences: 438
Number of extensions: 4319
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)