Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0025
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8EGJ9 Cluster: Transcriptional regulator, putative; n=...    33   5.9  
UniRef50_A7B8H3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_A7RZG6 Cluster: Predicted protein; n=2; Nematostella ve...    33   7.7  

>UniRef50_Q8EGJ9 Cluster: Transcriptional regulator, putative; n=19;
           Shewanella|Rep: Transcriptional regulator, putative -
           Shewanella oneidensis
          Length = 302

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 580 PLGDSDLLVDAATIPLPPLVTDCVPHATLLTIDTK 476
           P  D D +V   ++ LPP +T+  P + LL ID+K
Sbjct: 195 PSTDGDTVVQVVSLTLPPQLTEAKPKSVLLGIDSK 229


>UniRef50_A7B8H3 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 532

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = -2

Query: 484 DTKLSSYVAS*RXNYSINHHKILRNSLASIPSSLCCHFA*LICIKLK-IVQIVN 326
           +T  +SYV +   N+SI   K+L+N ++ + S +C  FA L+ + +  ++ +++
Sbjct: 102 ETGNASYVTAFNQNFSIIEEKVLQNRISILDSVICIVFAVLVLLYMNPLISVIS 155


>UniRef50_A7RZG6 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1854

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 565 DLLVDAATIPLPPLVTDCVPHATLLTIDTKLSSYVAS*RXNYSINHHKILRNSLASIPSS 386
           D  V   T  L  L++DC+PH  +L+  +K  SY    R    +NH     N    + S+
Sbjct: 484 DAFVPMVTSILEVLISDCIPHVGVLSKSSKHCSYDILGRKVLPLNHRDHDLNLTTELKSA 543

Query: 385 L 383
           L
Sbjct: 544 L 544


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,686,721
Number of Sequences: 1657284
Number of extensions: 10648367
Number of successful extensions: 24072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24068
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)