Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0025
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0433 + 3353255-3353374,3353532-3353828                           31   1.0  
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373...    28   5.5  
10_08_0018 + 14164103-14164225,14164596-14164892                       28   7.2  
02_02_0629 + 12386214-12386533,12386666-12386749,12386834-123869...    28   7.2  
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783...    27   9.6  

>03_01_0433 + 3353255-3353374,3353532-3353828
          Length = 138

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
 Frame = +3

Query: 525 KGGKGIVAAST---RRSESPRGQPQIP-SXPSRAALRFPV 632
           KGGKG++AA T   + ++  + + + P S  SRA L+FPV
Sbjct: 4   KGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPV 43


>02_04_0350 +
           22234632-22235145,22235277-22236209,22237253-22237340,
           22237859-22237865
          Length = 513

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 586 GCPLGDSDLLVDAATIPLPPLVTDCVPHATLLTID 482
           G P  D+D   D A+I    + T C+PH T L +D
Sbjct: 74  GLPPSDADATQDPASICYSTMTT-CLPHFTKLLVD 107


>10_08_0018 + 14164103-14164225,14164596-14164892
          Length = 139

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = +3

Query: 525 KGGKGIVAAST----RRSESPRGQPQIP-SXPSRAALRFPV 632
           KGGKG++AA T      ++  + + + P S  SRA ++FPV
Sbjct: 4   KGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPV 44


>02_02_0629 +
           12386214-12386533,12386666-12386749,12386834-12386972,
           12387990-12388061,12388158-12388252,12388397-12388483,
           12388554-12388629,12388738-12389031,12389526-12389665,
           12389751-12389939,12390028-12390118,12390206-12390332,
           12391146-12391253,12391343-12391433,12391676-12391685
          Length = 640

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 206 DCRDAGPHSELHKFCGTSCRLYKIQRANPK 295
           + +D GP  +L++FC +   +++I++  P+
Sbjct: 370 EVKDVGPAIQLYEFCNSFGEIFQIRKGQPE 399


>10_06_0099 -
           10677024-10677073,10677894-10677998,10678254-10678315,
           10678694-10679197,10679695-10680356,10680695-10680793,
           10680881-10681110,10681227-10681278,10681391-10681577,
           10681661-10681873,10682006-10682175,10683455-10683730,
           10684188-10684643,10685527-10685766,10687517-10687771
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 186 FDISTRETAETPAHTRNYINSVELVAGSIKFNEPTRSHV 302
           +DI T  T  T  +  + I S +L   +I F +PTR HV
Sbjct: 496 YDI-TNHTYPTKMYDSDVIASDDLHISNIDFGDPTRKHV 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,507
Number of Sequences: 37544
Number of extensions: 288641
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)