Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0025
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)                  28   5.6  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     28   7.4  
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   27   9.8  
SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)                 27   9.8  

>SB_18941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 144 TKKLIYFDTNLNMYFDISTRETAETPAHTRNYINSVE 254
           T  +++ D  + M+ D+S  + A+  AHTR    S+E
Sbjct: 316 TASVLFDDQPIFMFEDVSLNKVADALAHTRQQFKSLE 352


>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
          Length = 574

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 260 CRLYKIQRANPKSCRVAMDFTTI 328
           C+ +K+ +AN K C+V  D T+I
Sbjct: 118 CKNFKVSKANSKLCKVEGDITSI 140


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 427 HKILRNSLASIPSSLCCHFA*LICIKLKIVQI-VNSCEVH-SNST*LRV 287
           + IL+  LA++   LCC F   I   L++V + V SC    SNS  LR+
Sbjct: 84  NNILQQELAALAGKLCCVFRLPITPSLEVVGMDVRSCGYFTSNSAPLRL 132


>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 276 FNEPTRSHVELLWTSQLFTI 335
           F++P+R HV L+WT   F +
Sbjct: 193 FSDPSRQHVVLVWTLLFFNV 212


>SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)
          Length = 633

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 468 RMSRLNVSTTRSIIIKFCETPWQ 400
           +++RLN+    S++ K C +PWQ
Sbjct: 295 KVARLNLQQISSLLCKKCASPWQ 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,583,034
Number of Sequences: 59808
Number of extensions: 348806
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)