Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0025
(641 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK075319-1|BAC11545.1| 605|Homo sapiens protein ( Homo sapiens ... 31 4.6
AB075509-1|BAE45756.1| 298|Homo sapiens putative protein produc... 31 4.6
AM083241-1|CAL07387.1| 88|Homo sapiens immunoglobulin heavy ch... 30 6.1
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 30 8.0
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 30 8.0
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 30 8.0
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 30 8.0
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 30 8.0
M10374-1|AAA51750.1| 1455|Homo sapiens APOB protein. 30 8.0
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 30 8.0
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 30 8.0
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 30 8.0
AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B varia... 30 8.0
>AK075319-1|BAC11545.1| 605|Homo sapiens protein ( Homo sapiens
cDNA FLJ90838 fis, clone Y79AA1002129. ).
Length = 605
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +3
Query: 522 TKGGKGIVAASTRR----SESPRGQPQIPSXPSRAA 617
T GG G+ AA+ RR S SP G P++P S +A
Sbjct: 48 TSGGNGLGAAAARRSLPDSASPAGSPEVPGPCSSSA 83
>AB075509-1|BAE45756.1| 298|Homo sapiens putative protein product
of Nbla00402 protein.
Length = 298
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +3
Query: 522 TKGGKGIVAASTRR----SESPRGQPQIPSXPSRAA 617
T GG G+ AA+ RR S SP G P++P S +A
Sbjct: 48 TSGGNGLGAAAARRSLPDSASPAGSPEVPGPCSSSA 83
>AM083241-1|CAL07387.1| 88|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 88
Score = 30.3 bits (65), Expect = 6.1
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -1
Query: 617 RCSRWSRGYLWLSPGGLRPS 558
RCS WSRG W S GG R S
Sbjct: 5 RCSCWSRGEAWYSLGGPRHS 24
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 3482 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 3541
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 3485 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 3544
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 3485 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 3544
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 2184 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 2243
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 3485 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 3544
>M10374-1|AAA51750.1| 1455|Homo sapiens APOB protein.
Length = 1455
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 377 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 436
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 3485 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 3544
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 3485 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 3544
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 3485 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 3544
>AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B variant
protein.
Length = 1615
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 NLNMYFDI--STRETAETPAHTRNYINSVELVAGSIKFNEPTRSHVELLWTSQLFTIWTI 344
+L YF I ST+ + +R Y ++ A + ++ TRS V+L TS++ IW +
Sbjct: 537 SLTSYFSIESSTKGDVKGSVLSREYSGTIASEANTYLNSKSTRSSVKLQGTSKIDDIWNL 596
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,180,659
Number of Sequences: 237096
Number of extensions: 1628901
Number of successful extensions: 2789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2787
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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