Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0025
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    28   4.9  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    27   8.6  
U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical
           protein C10A4.1 protein.
          Length = 612

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 43  IEVRLVCLCDS*GNNLQNY*IYLKSND 123
           IE ++VC+C   G+N+QN    LKSND
Sbjct: 239 IEGKIVCMCRDGGSNVQNACDLLKSND 265


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 168 TNLNMYFDISTRETAETPAHTRNYINSVELVAGSI------KFNEPTRSHVELLWTSQ 323
           +N+N Y  +     ++  AHT +Y N V+ + GS+      K N PT S     W SQ
Sbjct: 95  SNMNPYDRLDKEVISKKNAHTNSYRNDVDELEGSLRTLGLQKVNAPTISSFS-AWKSQ 151


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 168 TNLNMYFDISTRETAETPAHTRNYINSVELVAGSI------KFNEPTRSHVELLWTSQ 323
           +N+N Y  +     ++  AHT +Y N V+ + GS+      K N PT S     W SQ
Sbjct: 95  SNMNPYDRLDKEVISKKNAHTNSYRNDVDELEGSLRTLGLQKVNAPTISSFS-AWKSQ 151


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 138 SDTKKLIYFDTNLNMYFDISTRETAETPAHTRNYINSVE 254
           S +KK+++ D N       S  ++ E PAH R Y +++E
Sbjct: 788 SSSKKVVFIDQN-KASAAASAGDSGEVPAHVRAYDDAIE 825


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = -2

Query: 592 ICGCPLGDSDLLVDAATIPLPPLVTDCVPHATLLTIDTKLSSY----VAS*RXNYSINHH 425
           IC  P+GDSD++    + P P + ++ +P     T + +L +     V S   +   +HH
Sbjct: 271 ICSLPIGDSDVI----SSPPPGIQSNTLPPVMAKTFEDELRTIMNKPVPSTSRHSHHHHH 326

Query: 424 KILRNSLASIPSSL 383
             L++     P+++
Sbjct: 327 SSLKDQNQGFPANI 340


>U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical
           protein F35H10.7 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 123 LRXLLSDTKK-LIYFDTNLNMYFDISTRETAETPAH--TRNYINSVELVAGSIKFNEP 287
           +R LL  T+  LIY   N N+Y   ++ +  +  A   T  + N++ L AG   FN P
Sbjct: 304 IRHLLQWTRAILIYPLCNTNIYTSATSPQPLDKMAEKFTAQFGNTIHLAAGLAHFNPP 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,860
Number of Sequences: 27780
Number of extensions: 260144
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)