Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0025
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/34 (17%), Positives = 17/34 (50%)
 Frame = +3

Query: 309 LWTSQLFTIWTIFNLMQIS*AKWQHRLLGILARE 410
           +W   L   + +F  ++++  +W+   +G+   E
Sbjct: 41  VWADGLLVFYEVFRYLELAMIRWKDTEIGLFLHE 74


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 505 GEHNLLLKAARV*LPRQREGLSPPGDNHKYPRDH 606
           G+   L+K   V  P  +EG     D  +YP  H
Sbjct: 673 GKLTRLIKRELVDAPADQEGDDDQVDEREYPESH 706


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 617 RCSRWSRGYLWLS 579
           +   WSRG  WLS
Sbjct: 19  QAQHWSRGNTWLS 31


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 617 RCSRWSRGYLWLS 579
           +   WSRG  WLS
Sbjct: 19  QAQHWSRGNTWLS 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,508
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)