Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0025
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800       29   2.6  
At2g38810.3 68415.m04767 histone H2A, putative strong similarity...    28   4.6  
At2g38810.2 68415.m04766 histone H2A, putative strong similarity...    28   4.6  
At2g38810.1 68415.m04765 histone H2A, putative strong similarity...    28   4.6  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   4.6  
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    28   6.1  

>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
          Length = 136

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 525 KGGKGIVAAST--RRSESPRGQPQIPSXPSRAALRFPV 632
           KGGKG+VAA T     +  + + +  S  +RA ++FPV
Sbjct: 4   KGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPV 41


>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
           histone H2A.F/Z Arabidopsis thaliana GI:2407800;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 525 KGGKGIVAASTRRSESPRG--QPQIPSXPSRAALRFPV 632
           KGGKG++AA T  + + +   + +  S  SRA ++FPV
Sbjct: 4   KGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPV 41


>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
           histone H2A.F/Z Arabidopsis thaliana GI:2407800;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 525 KGGKGIVAASTRRSESPRG--QPQIPSXPSRAALRFPV 632
           KGGKG++AA T  + + +   + +  S  SRA ++FPV
Sbjct: 4   KGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPV 41


>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
           histone H2A.F/Z Arabidopsis thaliana GI:2407800;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 525 KGGKGIVAASTRRSESPRG--QPQIPSXPSRAALRFPV 632
           KGGKG++AA T  + + +   + +  S  SRA ++FPV
Sbjct: 4   KGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPV 41


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 564 SESPRGQPQIPSXPSRAALRFPVL 635
           S SP   P + + P R A+RFP+L
Sbjct: 885 SSSPAETPSVAAAPQRNAVRFPIL 908


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -1

Query: 602 SRGYLWLSPGGLRPSR*RGNYTLA----AFSNRLCSPCYIINNRHETKFVCRVLTXQLLD 435
           S+ YL L P    P R +   +L     A  +   S  Y+++  H  + +C +L+ + LD
Sbjct: 776 SKFYLKLMPFVTTPYRSKLQSSLVFRMYAMVSLFLSKAYLLDI-HIPQEICNLLSLKTLD 834

Query: 434 QSS*NFAKLP 405
            S  NF KLP
Sbjct: 835 LSGNNFGKLP 844


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,789
Number of Sequences: 28952
Number of extensions: 235956
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)