Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0023
(692 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 23 2.1
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 23 2.1
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 2.1
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 2.1
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 2.8
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.8
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 23 2.8
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 23 3.6
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 23 3.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 4.8
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 4.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 4.8
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 6.4
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 21 8.4
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 23.4 bits (48), Expect = 2.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 288 VCSSAYKGNKKKICALR 238
VC Y NKKK+C R
Sbjct: 72 VCRLGYLRNKKKVCVPR 88
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 23.4 bits (48), Expect = 2.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 288 VCSSAYKGNKKKICALR 238
VC Y NKKK+C R
Sbjct: 72 VCRLGYLRNKKKVCVPR 88
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -2
Query: 652 NSHNGGQSITRTLVCLRSSYKYISVLAI*TVLFPLPVDTGFLPRTPTWP 506
N++N + + L C Y ++ I + P+P+ G P P P
Sbjct: 87 NNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNFPPRPMGP 135
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -2
Query: 652 NSHNGGQSITRTLVCLRSSYKYISVLAI*TVLFPLPVDTGFLPRTPTWP 506
N++N + + L C Y ++ I + P+P+ G P P P
Sbjct: 87 NNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNFPPRPMGP 135
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.8
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -2
Query: 652 NSHNGGQSITRTLVCLRSSYKYISVLAI*TVLFPLPVDTGFLPRTPTWP 506
N++N + + L C Y ++ I + P+P+ G P P P
Sbjct: 87 NNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIYCGNFPPRPMGP 135
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 2.8
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = -1
Query: 419 SWMSVIWTNRH 387
SWM+++WT+ H
Sbjct: 93 SWMTLMWTDSH 103
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 23.0 bits (47), Expect = 2.8
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 388 CLLVQITLIQL*FISKS-RHTNRTHPGKS*LQQLFADRNVW 507
C L + L +L I + +H N H K+ ++ L ++ ++W
Sbjct: 204 CNLENVKLKELRIILEDIKHINTRHNTKNGMKTLLSETDIW 244
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 208 VQLLADYVDTVI*QLLVTLIFHIELH 131
+ L ++ +V+ L T++FH+E H
Sbjct: 155 IMLSFAWIGSVVCSLPQTIVFHLETH 180
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.6 bits (46), Expect = 3.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 86 NDYLELILGWKVWKSHATAKPDLPPSSC 3
N Y +IL W ++ + + +LP SC
Sbjct: 74 NVYYIVILAWAIFYFFMSMRSELPWGSC 101
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 4.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 378 CLIVSISPDNAHPTLI 425
C IVS SP HP I
Sbjct: 359 CNIVSCSPQTVHPETI 374
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -1
Query: 107 YATXVTG---NDYLELILGWKVWKSHATAKPDLPPSSC 3
YAT V N Y +IL W ++ + + DLP +C
Sbjct: 102 YATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTC 139
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -1
Query: 107 YATXVTG---NDYLELILGWKVWKSHATAKPDLPPSSC 3
YAT V N Y +IL W ++ + + DLP +C
Sbjct: 155 YATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTC 192
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.8 bits (44), Expect = 6.4
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -3
Query: 591 NTSAYLQFKPFCSRFPWIQAFSLALPRGPHVSVSEKLLQLTLTWMCSVGMTRF----RNE 424
N S +++ + + FP+ AF + R + S +KL+ +T+M G+ + ++
Sbjct: 290 NLSMTMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLIDNWMTYMPPSGIPNWVPGNHDQ 349
Query: 423 LKLDERY 403
L+L R+
Sbjct: 350 LRLVSRF 356
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.4 bits (43), Expect = 8.4
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -3
Query: 591 NTSAYLQFKPFCSRFPWIQAFSLALPRGPHVSVSEKLLQLTLTWMCSVGMTRF----RNE 424
N S +++ + + FP+ AF + R + S +KL+ +T+M G+ + ++
Sbjct: 290 NLSMTMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLVDNWMTYMPPSGIPNWVPGNHDQ 349
Query: 423 LKLDERY 403
L+L R+
Sbjct: 350 LRLVSRF 356
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,229
Number of Sequences: 438
Number of extensions: 4241
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -