Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0022
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CP28 Cluster: Chromosome undetermined scaffold_23, wh...    34   3.6  
UniRef50_O97278 Cluster: Transporter, putative; n=2; Plasmodium|...    33   4.8  
UniRef50_Q6MAB1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.3  

>UniRef50_A0CP28 Cluster: Chromosome undetermined scaffold_23, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_23,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 556

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +1

Query: 316 LELCNVFFFNKHVTLLTIN*HD*LSRWHLMFSISFCFFPSRVLLVYKNRFNNFLILK 486
           LE CN+F FNK +T LT+  H+ +   H +  +   F    +L + KN  NN  +LK
Sbjct: 438 LENCNLFNFNK-ITKLTLQ-HNRICHLHEINQLLNYFQKIDILQIEKNEINNSTLLK 492


>UniRef50_O97278 Cluster: Transporter, putative; n=2; Plasmodium|Rep:
            Transporter, putative - Plasmodium falciparum (isolate
            3D7)
          Length = 3133

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = -1

Query: 599  HKDKIQYRQ--VRLKRSF*NFIDYEYK---ILDKRLIQYIHDYFSIKK 471
            +K+KI Y+     +K +F  F  ++ K   I D ++I Y+H +FSI K
Sbjct: 2883 NKNKITYKNYTTNIKNNFKKFYSFQIKLKGIRDSKIIDYVHMFFSINK 2930


>UniRef50_Q6MAB1 Cluster: Putative uncharacterized protein; n=1;
            Candidatus Protochlamydia amoebophila UWE25|Rep: Putative
            uncharacterized protein - Protochlamydia amoebophila
            (strain UWE25)
          Length = 2402

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 13/49 (26%), Positives = 30/49 (61%)
 Frame = -1

Query: 530  YKILDKRLIQYIHDYFSIKKLLKRFLYTSRTREGKKQNEIENIKCHRDN 384
            +KI+   ++++I+D   +KKL+K+ LY   + +  ++  ++ + C  DN
Sbjct: 2311 FKIIGS-VLEFIYDKTGLKKLMKKILYNFLSLDANRERILDFLTCTPDN 2358


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,375,852
Number of Sequences: 1657284
Number of extensions: 7427823
Number of successful extensions: 17416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17299
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)