Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0022
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.3  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   7.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   9.9  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 236 FFTYFFFLEHCHFVSLLFFR*LHFAFI*SYVMFFFLTNMLRCLRLINTT 382
           FF +FFF  HC    +  F   + + +  +  FFF  ++      + T+
Sbjct: 78  FFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTS 126



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 238 FYLFFLFRALPFCFAFIL*VVAFRFYLELC 327
           F+ FF + +L   F+F+   + F F+  LC
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFFRLC 136


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 200 ICNVPNVFERNLFFTYFFFLEHCHFVSLLFFR*LH 304
           + ++P+V  R  FF +FF L H   V ++F   LH
Sbjct: 200 VASLPSV--RRKFFEWFFVLHHTCSVLIIFLIWLH 232


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 233 LFFTYFFFLEHCHFVSLLF 289
           L F +FFFL  C F+S LF
Sbjct: 153 LHFLFFFFLCVCVFLSFLF 171


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 437 REGKKQNEIENIKCHRD 387
           R+ K+QNE+  +K HRD
Sbjct: 464 RQPKRQNEMPRLKTHRD 480


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 239 FTYFFFLEHCHFVSL 283
           F ++F L+H HF+S+
Sbjct: 356 FFFYFILDHLHFISI 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,348
Number of Sequences: 5004
Number of extensions: 36766
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)