Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0022
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 195 IRFVMCQTCLKGICFLPIFSF*STAILFRFYSLGSCISL 311
           I F M  TC+  + F+P++      +  R  S+   ISL
Sbjct: 850 IGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMSVTISL 888


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 195 IRFVMCQTCLKGICFLPIF 251
           I F M  TC+  + F+PI+
Sbjct: 708 IGFTMYTTCIIWLAFVPIY 726


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 195 IRFVMCQTCLKGICFLPIF 251
           I F M  TC+  + F+PI+
Sbjct: 798 IGFTMYTTCIIWLAFVPIY 816


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 446  SRTREGKKQNEIENIKCHRD 387
            S   + K+ NEI   +C RD
Sbjct: 1872 SSFNDSKESNEISEAECDRD 1891


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,369
Number of Sequences: 438
Number of extensions: 2656
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)