Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0022
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19080.1 68417.m02813 hypothetical protein contains Pfam doma...    29   3.7  
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p...    28   6.5  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    28   6.5  

>At4g19080.1 68417.m02813 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 327

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 509 LIQYIHDYFSIKKLLKRFLYTSRTREGKKQNE--IENIKCHR 390
           LI Y+ ++FSI   +   ++TSRTR  K+  E   E +K HR
Sbjct: 30  LINYLLEFFSISDQVNEIVFTSRTRLTKELWEFIFEEVK-HR 70


>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|Q9Y672 Dolichyl pyrophosphate
           Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Homo sapiens}; contains Pfam
           profile PF03155: ALG6, ALG8 glycosyltransferase family
          Length = 533

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
 Frame = +1

Query: 295 VVAFRFYLELCNVFFFN-KHVTLLTIN*HD*-----LSRWHLMFSISFCFFPSR---VLL 447
           + A++ Y+    + FFN + V LL+   H+      L RW ++ S +F FFP+    VL+
Sbjct: 110 LTAYQSYIHGIFLRFFNPESVALLSSRGHESYLGKLLMRWTVLSSDAFIFFPAALFFVLV 169

Query: 448 VYKNR 462
            ++NR
Sbjct: 170 YHRNR 174


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 197 KICNVPNVFERNLFFTYFFF 256
           K+CN P +FERN   +Y +F
Sbjct: 880 KVCNHPELFERNEGSSYLYF 899


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,799,304
Number of Sequences: 28952
Number of extensions: 160141
Number of successful extensions: 320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)