Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0021
(651 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 106 5e-22
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 93 5e-18
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 91 2e-17
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 83 4e-15
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 78 2e-13
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 76 6e-13
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 76 8e-13
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 75 1e-12
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 75 1e-12
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 73 5e-12
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 73 5e-12
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 73 6e-12
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 73 8e-12
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 65 1e-09
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 64 3e-09
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 62 8e-09
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 62 1e-08
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 62 1e-08
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 55 1e-06
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 54 2e-06
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 54 2e-06
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 53 5e-06
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 51 3e-05
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 51 3e-05
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 49 8e-05
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 49 8e-05
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 48 1e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 5e-04
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 46 6e-04
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 45 0.001
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 45 0.001
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 43 0.007
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 42 0.017
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 41 0.022
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 41 0.022
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 41 0.030
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 41 0.030
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 41 0.030
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 41 0.030
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 41 0.030
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 38 0.21
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 38 0.28
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 37 0.48
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 37 0.48
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 36 0.64
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 36 0.84
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 36 0.84
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 36 0.84
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 35 1.5
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 33 4.5
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 33 5.9
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 33 5.9
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 33 7.8
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 33 7.8
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 106 bits (254), Expect = 5e-22
Identities = 84/215 (39%), Positives = 93/215 (43%), Gaps = 3/215 (1%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 9 HKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVM 68
Query: 184 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPH 363
N LVPL+LGAPD+AFP F PP L + + +T +
Sbjct: 69 PIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSI--VENGAGTGWTVY 126
Query: 364 FHLISHIE--GDPEILLFFHYX*QGFPQ-L*EQXXXXXXXXXXXXXXXXXXXXXFV*AVG 534
L S+I G L F G L FV AVG
Sbjct: 127 PPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVG 186
Query: 535 IQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
I F V GAIT+LLTDRNLNTSFFDPAG
Sbjct: 187 ITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAG 221
Score = 57.6 bits (133), Expect = 2e-07
Identities = 29/50 (58%), Positives = 31/50 (62%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F IVENGAGTG TVYPPLSSNIAH G S D
Sbjct: 92 PRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVD 141
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 93.1 bits (221), Expect = 5e-18
Identities = 73/187 (39%), Positives = 83/187 (44%), Gaps = 3/187 (1%)
Frame = +1
Query: 88 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPE*II 267
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFP
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 268 *DFDSYPPPLYY*FQEEL*KMVQEQDEQFTPHFHLISHIE--GDPEILLFFHYX*QGFPQ 441
F PP L + + +T + L S+I G L F G
Sbjct: 73 MSFWLLPPSLILLISSSI--VENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 130
Query: 442 -L*EQXXXXXXXXXXXXXXXXXXXXXFV*AVGIQHFXXXXXXLV*LGAITILLTDRNLNT 618
L F+ AVGI V GAIT+LLTDRNLNT
Sbjct: 131 ILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNT 190
Query: 619 SFFDPAG 639
SFFDPAG
Sbjct: 191 SFFDPAG 197
Score = 57.6 bits (133), Expect = 2e-07
Identities = 29/50 (58%), Positives = 31/50 (62%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F IVENGAGTG TVYPPLSSNIAH G S D
Sbjct: 68 PRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVD 117
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 91.5 bits (217), Expect = 2e-17
Identities = 50/93 (53%), Positives = 57/93 (61%)
Frame = -2
Query: 296 KGGG*ESKSYIIYSGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SS 117
K GG + GNA+SGAP++ GTNQFPNPP KA AVT+ L I S
Sbjct: 126 KEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSF 184
Query: 116 PINDPGFPNSARIKSLKDVPIIPDQIPKIKYNV 18
PI PG PNSARIKSL DVP +P PK+KYNV
Sbjct: 185 PIKLPGCPNSARIKSLSDVPTMPAHAPKMKYNV 217
Score = 74.9 bits (176), Expect = 1e-12
Identities = 53/136 (38%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = -3
Query: 649 SPPSQQDQKRMYL--SFDLLIIW**LPAKPGSDNNNKNAVS-LQLIQIRV*SNDILFNRI 479
SPP +K ++ S ++I PA GS++N+K AVS + S I +R+
Sbjct: 8 SPPPAGSKKEVFKFRSVKSIVI---APASTGSESNSKMAVSNTDQTNSGMRSMVIPADRM 64
Query: 478 LIMVVXXXXXXXXXXXXXXXXXXXARSPDLPLCAILDESGG*TVHPVPAPFSTILLEINN 299
LI VV S D P CAI SGG TVHPVP P STI L +
Sbjct: 65 LITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSK 124
Query: 298 IREGGRSQNLILFIRG 251
++EGG +QNL+LFIRG
Sbjct: 125 VKEGGSNQNLMLFIRG 140
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 83.4 bits (197), Expect = 4e-15
Identities = 65/213 (30%), Positives = 86/213 (40%), Gaps = 1/213 (0%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 13 HKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVM 72
Query: 184 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQD-EQFTP 360
N VPL++GAPD+AFP F PP L+ L + + P
Sbjct: 73 PTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPP 132
Query: 361 HFHLISHIEGDPEILLFFHYX*QGFPQL*EQXXXXXXXXXXXXXXXXXXXXXFV*AVGIQ 540
+ +H G ++ +F + L FV +V I
Sbjct: 133 LASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLIT 192
Query: 541 HFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
V GAIT+LLTDR NT+FFDPAG
Sbjct: 193 AILLLLSLPVLAGAITMLLTDRYFNTTFFDPAG 225
Score = 48.4 bits (110), Expect = 1e-04
Identities = 25/50 (50%), Positives = 28/50 (56%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NNI F +VE GAGTG TVYPPL+S AH G S D
Sbjct: 96 PRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVD 145
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 78.2 bits (184), Expect = 2e-13
Identities = 64/215 (29%), Positives = 85/215 (39%), Gaps = 3/215 (1%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 177
H+DIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 13 HKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFM 72
Query: 178 XXXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQD-EQF 354
N VP+++GAPD+AFP F PP L L ++ +
Sbjct: 73 VMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVY 132
Query: 355 TPHFHLISHIEGDPEILLFFHYX*QGFPQL*EQXXXXXXXXXXXXXXXXXXXXXFV*AVG 534
P + SH G ++ +F + L FV +V
Sbjct: 133 PPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVL 192
Query: 535 IQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
+ F V GAIT+LLTDRN NT+FFDPAG
Sbjct: 193 VTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAG 227
Score = 44.0 bits (99), Expect = 0.003
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NNI F +VE G+GTG TVYPPLS +H G + D
Sbjct: 98 PRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVD 147
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 76.2 bits (179), Expect = 6e-13
Identities = 63/215 (29%), Positives = 87/215 (40%), Gaps = 3/215 (1%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 177
H+DIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 18 HKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFM 77
Query: 178 XXXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KM-VQEQDEQF 354
N LVP+++G+PD+AFP F PP L L ++ V +
Sbjct: 78 VMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVY 137
Query: 355 TPHFHLISHIEGDPEILLFFHYX*QGFPQL*EQXXXXXXXXXXXXXXXXXXXXXFV*AVG 534
P + SH G ++ +F + L FV ++
Sbjct: 138 PPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSIL 197
Query: 535 IQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
+ F V GAIT+LLTDRN NTSFFD +G
Sbjct: 198 VTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASG 232
Score = 44.4 bits (100), Expect = 0.002
Identities = 23/50 (46%), Positives = 27/50 (54%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NNI F +VE G GTG TVYPPLSS +H G + D
Sbjct: 103 PRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVD 152
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 75.8 bits (178), Expect = 8e-13
Identities = 39/84 (46%), Positives = 45/84 (53%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 13 HKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVM 72
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N LVPL++GAPD+AFP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFP 96
Score = 49.2 bits (112), Expect = 8e-05
Identities = 25/50 (50%), Positives = 29/50 (58%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F VE GAGTG TVYPPL+ N+AH G S D
Sbjct: 96 PRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVD 145
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +1
Query: 583 ITILLTDRNLNTSFFDPAG 639
IT+LLTDRNLNT+FFDPAG
Sbjct: 207 ITMLLTDRNLNTTFFDPAG 225
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 74.9 bits (176), Expect = 1e-12
Identities = 65/214 (30%), Positives = 82/214 (38%), Gaps = 3/214 (1%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQD-EQFT 357
N LVP+++GAPD+AFP F PP L + +
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 358 PHFHLISHIEGDPEILLFFHYX*QGFPQL*EQXXXXXXXXXXXXXXXXXXXXXFV*AVGI 537
P L SH G ++ +F + L FV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 538 QHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
V GAIT+LLTDRN NTSF+DPAG
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAG 224
Score = 46.0 bits (104), Expect = 8e-04
Identities = 24/50 (48%), Positives = 26/50 (52%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NNI F VE GAGTG TVYPPLS +H G S D
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVD 144
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 74.9 bits (176), Expect = 1e-12
Identities = 65/214 (30%), Positives = 82/214 (38%), Gaps = 3/214 (1%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQD-EQFT 357
N LVP+++GAPD+AFP F PP L + +
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 358 PHFHLISHIEGDPEILLFFHYX*QGFPQL*EQXXXXXXXXXXXXXXXXXXXXXFV*AVGI 537
P L SH G ++ +F + L FV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 538 QHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
V GAIT+LLTDRN NTSF+DPAG
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAG 224
Score = 46.0 bits (104), Expect = 8e-04
Identities = 24/50 (48%), Positives = 26/50 (52%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NNI F VE GAGTG TVYPPLS +H G S D
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVD 144
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 73.3 bits (172), Expect = 5e-12
Identities = 38/84 (45%), Positives = 44/84 (52%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N LVPL++GAPD+AFP
Sbjct: 72 PVMIGGFGNWLVPLMIGAPDMAFP 95
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F VE GAGTG TVYPPL+ N+AH G S D
Sbjct: 95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVD 144
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +1
Query: 583 ITILLTDRNLNTSFFDPAG 639
IT+LLTDRNLNT+FFDPAG
Sbjct: 206 ITMLLTDRNLNTTFFDPAG 224
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 73.3 bits (172), Expect = 5e-12
Identities = 38/84 (45%), Positives = 44/84 (52%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N LVPL++GAPD+AFP
Sbjct: 72 PILIGGFGNWLVPLMIGAPDMAFP 95
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F VE GAGTG TVYPPL+ N+AH G S D
Sbjct: 95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVD 144
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +1
Query: 583 ITILLTDRNLNTSFFDPAG 639
IT+LLTDRNLNT+FFDPAG
Sbjct: 206 ITMLLTDRNLNTTFFDPAG 224
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 72.9 bits (171), Expect = 6e-12
Identities = 37/84 (44%), Positives = 44/84 (52%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N L+PL++GAPD+AFP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFP 84
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F +E GAGTG TVYPPL+ N+AH G S D
Sbjct: 84 PRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVD 133
Score = 36.7 bits (81), Expect = 0.48
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 583 ITILLTDRNLNTSFFDP 633
IT+LLTDRNLNT+FFDP
Sbjct: 195 ITMLLTDRNLNTTFFDP 211
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 72.5 bits (170), Expect = 8e-12
Identities = 41/98 (41%), Positives = 48/98 (48%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 12 HKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVM 71
Query: 184 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 297
N LVPL++GAPD+AFP F PP L
Sbjct: 72 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSL 109
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F +VE GAGTG TVYPPL+ N +H G S D
Sbjct: 95 PRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVD 144
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +1
Query: 583 ITILLTDRNLNTSFFDPAG 639
IT+LLTDRNLNT+FFDPAG
Sbjct: 206 ITMLLTDRNLNTTFFDPAG 224
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 65.3 bits (152), Expect = 1e-09
Identities = 38/84 (45%), Positives = 44/84 (52%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+D GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 13 HKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXM 72
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N LVPL++GAPD+AFP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFP 96
Score = 36.7 bits (81), Expect = 0.48
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 368
PR+NN+ F VE GAGTG TVYPPL+
Sbjct: 96 PRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 64.1 bits (149), Expect = 3e-09
Identities = 34/70 (48%), Positives = 39/70 (55%)
Frame = +1
Query: 88 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPE*II 267
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFP
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 268 *DFDSYPPPL 297
F PP L
Sbjct: 83 MSFWFLPPSL 92
Score = 50.4 bits (115), Expect = 4e-05
Identities = 25/50 (50%), Positives = 28/50 (56%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F VE+GAGTG TVYPPLS N AH G S D
Sbjct: 78 PRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVD 127
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +1
Query: 577 GAITILLTDRNLNTSFFDPAG 639
GAIT+LLTDRN NTSFFDPAG
Sbjct: 187 GAITMLLTDRNFNTSFFDPAG 207
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 62.5 bits (145), Expect = 8e-09
Identities = 32/72 (44%), Positives = 39/72 (54%)
Frame = +1
Query: 88 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPE*II 267
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFP
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 268 *DFDSYPPPLYY 303
F +P +Y
Sbjct: 84 MSFGFFPLHWHY 95
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 62.1 bits (144), Expect = 1e-08
Identities = 41/129 (31%), Positives = 50/129 (38%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGDXXXXXXXXXX 431
PR+NN+ F +VENGAGTG TVYPPLSS AH G S D
Sbjct: 11 PRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD---LAIYSTV 67
Query: 432 XXXXXXXXXXXXXXXXXXXXXXSFDHTLICMSCRDTAFXXXXXXXXXXXXYYHIINRSKL 611
+F T ICM C + + +Y+IIN K
Sbjct: 68 INMRSAGITLDRFFFTFSSNFLNFSITFICMICCNYCYFITSFFTCFSSSHYYIINWPKS 127
Query: 612 KYILF*SCW 638
KY +F W
Sbjct: 128 KYFIFWPNW 136
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 61.7 bits (143), Expect = 1e-08
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = +1
Query: 88 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FP
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFP 79
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +1
Query: 577 GAITILLTDRNLNTSFFDPAG 639
GAIT+LLTDRN+NTSFFDP+G
Sbjct: 188 GAITMLLTDRNMNTSFFDPSG 208
Score = 39.9 bits (89), Expect = 0.052
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ F + G GTG TVYPPLS + H G S D
Sbjct: 79 PRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVD 128
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 55.2 bits (127), Expect = 1e-06
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 177
H+DIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 14 HKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFM 73
Query: 178 XXXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 297
N VP+++G+PD+AFP F PP L
Sbjct: 74 VMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSL 113
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 54.4 bits (125), Expect = 2e-06
Identities = 36/99 (36%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 297
N LVP+++GAPD+AFP F PP L
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSL 109
Score = 46.0 bits (104), Expect = 8e-04
Identities = 24/50 (48%), Positives = 26/50 (52%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NNI F VE GAGTG TVYPPLS +H G S D
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVD 144
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 54.4 bits (125), Expect = 2e-06
Identities = 36/99 (36%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 297
N LVP+++GAPD+AFP F PP L
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSL 109
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 53.2 bits (122), Expect = 5e-06
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 183
+DIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 184 XXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 297
N L+PL++G PD+AFP F PP L
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSL 138
Score = 37.5 bits (83), Expect = 0.28
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSGD 401
PR+NNI F I+E G GTG T+ YPPLS +H G S D
Sbjct: 124 PRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVD 177
Score = 33.9 bits (74), Expect = 3.4
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1
Query: 583 ITILLTDRNLNTSFFDPAG 639
IT++LTDRN NTSFF+ AG
Sbjct: 232 ITMVLTDRNFNTSFFEVAG 250
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/50 (54%), Positives = 29/50 (58%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRINNI F +VE+GAGTG TVYPPLSS AH G S D
Sbjct: 96 PRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVD 145
Score = 40.3 bits (90), Expect = 0.039
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFP 255
N L+PL++GA D AFP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFP 96
Score = 32.7 bits (71), Expect = 7.8
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 517 FV*AVGIQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
FV ++ I F V IT+LL DRN NTSFF+ +G
Sbjct: 185 FVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSG 225
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/50 (54%), Positives = 29/50 (58%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRINNI F +VE+GAGTG TVYPPLSS AH G S D
Sbjct: 96 PRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVD 145
Score = 40.3 bits (90), Expect = 0.039
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFP 255
N L+PL++GA D AFP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFP 96
Score = 32.7 bits (71), Expect = 7.8
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 517 FV*AVGIQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
FV ++ I F V IT+LL DRN NTSFF+ +G
Sbjct: 185 FVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSG 225
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 49.2 bits (112), Expect = 8e-05
Identities = 26/50 (52%), Positives = 29/50 (58%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRINNI F +VE+GAGTG TVYPPL+S AH G S D
Sbjct: 96 PRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVD 145
Score = 38.3 bits (85), Expect = 0.16
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DI LY EL PG L G++Q++N +V HA
Sbjct: 12 KDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMV 71
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFP 255
N ++PL++GA D AFP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDTAFP 96
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 49.2 bits (112), Expect = 8e-05
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 183
+DIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N L+PL LG PD+ FP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFP 96
Score = 42.3 bits (95), Expect = 0.010
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NNI + +ENG GTG T+YPPLS +H G S D
Sbjct: 96 PRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVD 145
Score = 36.3 bits (80), Expect = 0.64
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 577 GAITILLTDRNLNTSFFDPAG 639
G IT++LTDRN NTSFF+ AG
Sbjct: 205 GGITMVLTDRNFNTSFFEVAG 225
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 48.4 bits (110), Expect = 1e-04
Identities = 26/50 (52%), Positives = 29/50 (58%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRIN+I F +VE+GAGTG TVYPPLSS AH G S D
Sbjct: 96 PRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVD 145
Score = 38.3 bits (85), Expect = 0.16
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 88 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
EL PGS L G+ Q++N +V HA N ++PL++GA D++FP
Sbjct: 39 ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFP 96
Score = 35.1 bits (77), Expect = 1.5
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +1
Query: 517 FV*AVGIQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
FV A+ I F V IT+LL DRN NTSFF+ AG
Sbjct: 185 FVWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAG 225
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 46.8 bits (106), Expect = 5e-04
Identities = 28/76 (36%), Positives = 35/76 (46%)
Frame = +2
Query: 254 PNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*REIRRSCYFFTTFSRD 433
PNK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 80 PNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCSS 139
Query: 434 FLNYRSN*FYYHHN*Y 481
N N YY+++ Y
Sbjct: 140 VFNSSLNQLYYNNHQY 155
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 46.4 bits (105), Expect = 6e-04
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = +1
Query: 517 FV*AVGIQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
FV AV I V GAIT+LLTDRN+NTSFFDPAG
Sbjct: 103 FVWAVEITAILLLLSLPVLAGAITMLLTDRNINTSFFDPAG 143
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/50 (52%), Positives = 28/50 (56%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR N+ F VE GAGTG TV PPLS+NIAH G S D
Sbjct: 14 PRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 177
H+ IGT Y EL +PG G Q+YN+++T H
Sbjct: 21 HKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFL 80
Query: 178 XXXXXXXXXXN*LVPLILGAPDIAFP 255
N ++PL+LGAP++AFP
Sbjct: 81 VMPILIGGFGNWMLPLMLGAPEMAFP 106
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 183
+DI LY EL PG I D+Q+YN+I+T+H
Sbjct: 39 KDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVM 98
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N L+P+++G PD+AFP
Sbjct: 99 PALIGGFGNFLLPILIGGPDMAFP 122
Score = 41.5 bits (93), Expect = 0.017
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ + I+ENG GTG T+YPPLS +H D
Sbjct: 122 PRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVD 171
Score = 36.7 bits (81), Expect = 0.48
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +1
Query: 580 AITILLTDRNLNTSFFDPAG 639
AIT+LLTDRNLNTSF++ AG
Sbjct: 232 AITMLLTDRNLNTSFYELAG 251
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 42.7 bits (96), Expect = 0.007
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIG LY EL +PG + + YN+++T+H
Sbjct: 94 HKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFAT 153
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N L+PL++GA D+AFP
Sbjct: 154 PIIAAFS-NYLIPLLIGADDMAFP 176
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 41.5 bits (93), Expect = 0.017
Identities = 22/50 (44%), Positives = 24/50 (48%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN F E G GTG TVYPPLSS +H G S D
Sbjct: 99 PRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVD 148
Score = 40.7 bits (91), Expect = 0.030
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 177
H+ IG LY EL PG L G+ YN I T H
Sbjct: 14 HKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVV 73
Query: 178 XXXXXXXXXXN*LVPLILGAPDIAFP 255
N VP+++GAPD++FP
Sbjct: 74 VMPILFGGFGNYFVPILIGAPDMSFP 99
Score = 39.9 bits (89), Expect = 0.052
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +1
Query: 517 FV*AVGIQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
FV +V + F V AIT+LL DRN NTSF+DP G
Sbjct: 188 FVWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVG 228
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 41.1 bits (92), Expect = 0.022
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 181 XXXXXXXXXN*LVPLILGAPDIAF 252
N L+PL+LGA D+AF
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAF 100
Score = 36.3 bits (80), Expect = 0.64
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 255 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
R+NNI F +VE GAGTG TVY PL+ +H G + D
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVD 150
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 41.1 bits (92), Expect = 0.022
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 181 XXXXXXXXXN*LVPLILGAPDIAF 252
N L+PL+LGA D+AF
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAF 100
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1
Query: 577 GAITILLTDRNLNTSFFDPAG 639
GAIT+LLTDRN T+FFDPAG
Sbjct: 310 GAITMLLTDRNFGTTFFDPAG 330
Score = 34.7 bits (76), Expect = 1.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 85 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Score = 34.3 bits (75), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PR+NN+ + +++ GAG G T YPP+S+ R+ D
Sbjct: 201 PRLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVD 250
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 40.7 bits (91), Expect = 0.030
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRINN+ F +++ G G+G T+YPPL+S +H G S D
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSID 162
Score = 37.5 bits (83), Expect = 0.28
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 97 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 40.7 bits (91), Expect = 0.030
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRINN+ F +++ G G+G T+YPPL+S +H G S D
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSID 162
Score = 37.5 bits (83), Expect = 0.28
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 97 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 40.7 bits (91), Expect = 0.030
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRINN+ F +++ G G+G T+YPPL+S +H G S D
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSID 162
Score = 37.5 bits (83), Expect = 0.28
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 97 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 40.7 bits (91), Expect = 0.030
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
PRINN+ F +++ G G+G T+YPPL+S +H G S D
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSID 162
Score = 37.5 bits (83), Expect = 0.28
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 97 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
NP L+ + Q++N ++TAHA N LVPL +G+ D AFP
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFP 113
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 37.9 bits (84), Expect = 0.21
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+ IG ++ EL PG I D YN + T H
Sbjct: 35 HKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMI 94
Query: 184 XXXXXXXXN*LVPLILGAPDIAFPE 258
N L+P+++GA D+AFP+
Sbjct: 95 PAIPSGFGNFLLPIMIGAKDVAFPK 119
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 37.5 bits (83), Expect = 0.28
Identities = 23/84 (27%), Positives = 30/84 (35%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+ IG ++ EL PG I D YN T H
Sbjct: 42 HKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMI 101
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N ++PL+LGA D+AFP
Sbjct: 102 PAIPAVFGNFMLPLMLGAKDVAFP 125
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 36.7 bits (81), Expect = 0.48
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY---N 135
H+DIGTLY AEL PG + D DQ Y N
Sbjct: 36 HKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWN 95
Query: 136 TIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
++TAH N VP+++GAPD+AFP
Sbjct: 96 VLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFP 135
Score = 35.1 bits (77), Expect = 1.5
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +1
Query: 517 FV*AVGIQHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
FV +V + F V AIT+LLTDRN T+F+D AG
Sbjct: 227 FVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAG 267
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 36.7 bits (81), Expect = 0.48
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 103 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
G L GD Q YN ++T+H N +P++ G PD+ FP
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFP 98
Score = 33.1 bits (72), Expect = 5.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 577 GAITILLTDRNLNTSFFDPAG 639
G +T++L DRN NTSF+D G
Sbjct: 207 GGVTLILCDRNFNTSFYDVVG 227
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 36.3 bits (80), Expect = 0.64
Identities = 20/84 (23%), Positives = 33/84 (39%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+DIGT+Y EL +PG + +Y++I+T HA
Sbjct: 14 HKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVM 73
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N +PL++ D++ P
Sbjct: 74 PTSIGGLGNWFIPLMIKIKDLSMP 97
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 35.9 bits (79), Expect = 0.84
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 100 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 255
PG + D + YN ++T H N L+PL++GA D+AFP
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFP 53
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 35.9 bits (79), Expect = 0.84
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXX 180
H+ +G LY EL G I DD +YNT + H
Sbjct: 14 HKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQ 73
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFP 255
N +PL++GA D+AFP
Sbjct: 74 IPALTGFFANYFIPLMIGAKDVAFP 98
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 35.9 bits (79), Expect = 0.84
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 318 IVENGAGTG*TVYPPLSSNIAHRGRSGD 401
+VE G G G TVYPPL+S + H G S D
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVD 39
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 35.1 bits (77), Expect = 1.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = +1
Query: 7 EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
+DI LY EL PG+ L G+ Q++N +V HA
Sbjct: 12 KDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLV 71
Query: 181 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPL 297
N L+PL++GA D++F F PP L
Sbjct: 72 MPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPAL 110
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 33.5 bits (73), Expect = 4.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 3 ARGYWNIIFYFWYLIRNNWNIFKTFNS 83
++ YWNI+F+FWYLI ++ K NS
Sbjct: 345 SQSYWNIMFHFWYLISFISHLAKINNS 371
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 33.1 bits (72), Expect = 5.9
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+ +G +Y AEL PG ++ +N + T H
Sbjct: 38 HKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGT 97
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N ++PL +GAPD+AFP
Sbjct: 98 PIVWGFA-NYVLPLQIGAPDVAFP 120
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 33.1 bits (72), Expect = 5.9
Identities = 21/84 (25%), Positives = 30/84 (35%)
Frame = +1
Query: 4 HEDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 183
H+ IG +Y +L P + + YN I+T H
Sbjct: 24 HKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFII 83
Query: 184 XXXXXXXXN*LVPLILGAPDIAFP 255
N +VPL+LGA D+A P
Sbjct: 84 QAGLTGFGNFVVPLMLGARDVALP 107
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 32.7 bits (71), Expect = 7.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 88 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPE 258
EL P + + D +YN + T H N L+P ++GAPD+AFP+
Sbjct: 64 ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPK 119
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 32.7 bits (71), Expect = 7.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 377
PRIN+I E G GTG T+YPPLS+++
Sbjct: 100 PRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSL 141
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,582,621
Number of Sequences: 1657284
Number of extensions: 8284730
Number of successful extensions: 13604
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 13111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13562
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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