Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0020
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    98   1e-21
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   3.7  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   6.4  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   8.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 43/78 (55%), Positives = 57/78 (73%)
 Frame = +2

Query: 314 YADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGIN 493
           Y  KK+ KP  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+N
Sbjct: 115 YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVN 174

Query: 494 KLQIMVLSRTTKFSVDLL 547
           K QI ++    K S++ L
Sbjct: 175 KFQINLVVEDDKVSLEAL 192



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +3

Query: 9   EKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASY 134
           +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y
Sbjct: 21  DKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATY 63



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 552 EKIPEFEDFVQSVDIAA 602
           E++  FED+VQS DIAA
Sbjct: 194 EELEGFEDYVQSTDIAA 210


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 170 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLAXLLK 60
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 466 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 359
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -3

Query: 592 STDCTKSS---NSGIFSGQQINRKLCRPR 515
           S++C ++S   N+G F+G+QI   +C+ R
Sbjct: 36  SSNCCRNSYTVNNGTFTGRQIYTSICKSR 64


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 181 PPVLNPRLPPQQRKTTMTT 237
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 320 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 415
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,120
Number of Sequences: 5004
Number of extensions: 44044
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)