Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0020
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   103   8e-23
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   101   3e-22
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   101   3e-22
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    28   5.0  

>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  103 bits (248), Expect = 8e-23
 Identities = 50/81 (61%), Positives = 59/81 (72%)
 Frame = +2

Query: 317 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINK 496
           A K S K     KSS+LLDVKPWDDETDMK++E  VR+++MEGL WGASKLVPVGYGI K
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKK 182

Query: 497 LQIMVLSRTTKFSVDLLTRKN 559
           LQIM+       SVD L  ++
Sbjct: 183 LQIMLTIVDDLVSVDSLIEEH 203



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 12  KSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 131
           K+YVSG   S+ D++VF  V   P A  P+  RWY+ +A+
Sbjct: 24  KTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  101 bits (243), Expect = 3e-22
 Identities = 51/80 (63%), Positives = 58/80 (72%)
 Frame = +2

Query: 308 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 487
           +A A K S K     KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYG
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYG 184

Query: 488 INKLQIMVLSRTTKFSVDLL 547
           I KLQIM+       SVD L
Sbjct: 185 IKKLQIMMTIVDDLVSVDSL 204



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 12  KSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 125
           +SY+SGY  S  D+ V+     AP+++  +V RW+  I
Sbjct: 24  RSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  101 bits (243), Expect = 3e-22
 Identities = 51/80 (63%), Positives = 58/80 (72%)
 Frame = +2

Query: 308 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 487
           +A A K S K     KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYG
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYG 200

Query: 488 INKLQIMVLSRTTKFSVDLL 547
           I KLQIM+       SVD L
Sbjct: 201 IKKLQIMMTIVDDLVSVDSL 220



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +3

Query: 12  KSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 131
           +SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I++
Sbjct: 43  RSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISA 82


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = +3

Query: 24  SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 125
           +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 92  NGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,813
Number of Sequences: 37544
Number of extensions: 310562
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)