Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0020
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   2e-26
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               38   0.008
SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 28   5.1  
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 27   8.8  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  116 bits (278), Expect = 2e-26
 Identities = 54/81 (66%), Positives = 64/81 (79%)
 Frame = +2

Query: 305 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 484
           LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKLVP+ Y
Sbjct: 123 LKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPLAY 182

Query: 485 GINKLQIMVLSRTTKFSVDLL 547
           GI KLQI V+    K S D L
Sbjct: 183 GIKKLQITVVVEDDKISTDFL 203



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 27/42 (64%), Positives = 31/42 (73%)
 Frame = +3

Query: 9   EKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 134
           E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 21  ERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 62



 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 552 EKIPEFEDFVQSVDIAA 602
           E+I +FEDFVQSVDIAA
Sbjct: 205 EEICKFEDFVQSVDIAA 221


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 30  YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 134
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +2

Query: 305 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 472
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 473 PVGYGINKLQIMVLSRTTKFSVDLLTRK 556
            + YG+ KLQI  +    K S D L  K
Sbjct: 120 EIAYGLKKLQITCVIEDAKVSTDDLIDK 147


>SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73  ARRRPLTFPT-YYDGIIKLLHTLRLNAKLGLRAPAH*PPVLNPRLPPQQRKTTMTTTLIY 249
           +R  P +F T  Y G I ++   +    LG  A      V+ PR+ PQ      T  +I 
Sbjct: 215 SREWPFSFTTCQYQGFISIMMATQSTQTLGCMALNRFYRVVKPRMYPQVFSLRNTICVIS 274

Query: 250 LVW 258
           L W
Sbjct: 275 LTW 277


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 464 KLVPVGYGINKLQIMVLSRTTKFSVDLLTRK 556
           KLV + YG+ KLQI  +    K S D L  K
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDK 32


>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2022

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 305  LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIE 436
            L A  D KS KPAL  K    + ++    E+ ++++EN+ R+IE
Sbjct: 1306 LDAGGDPKSSKPALQHKIQEEVGIRIVRLESALEKVENEKRSIE 1349


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 305 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKE 409
           LK  AD   KKP  +    ++ D  P D+E + KE
Sbjct: 76  LKPAADVTPKKPKKVKHKPVIADPVPVDEEEEPKE 110


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 371 DVKPWDDETDMKEMEN 418
           DV+PWD  TD+ E EN
Sbjct: 653 DVRPWDPLTDLVEYEN 668


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,050,719
Number of Sequences: 59808
Number of extensions: 332475
Number of successful extensions: 879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)