Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0019
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831...    31   0.87 
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890...    29   3.5  
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314...    28   6.1  
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120...    28   8.1  

>02_04_0619 -
           24481641-24482291,24482426-24482640,24482770-24483154,
           24483170-24483258,24485488-24485622,24485833-24487108
          Length = 916

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 319 RRNKETYLIDLSNSTSSHLVK*NRAQNAKLNTREKALKQ*TKYHHARYDNIVGKSQN 489
           ++NK+    +L++S+  H+VK N     K   +   L Q    H++ Y ++VGK  N
Sbjct: 146 KKNKQRDKYELASSSKEHVVKENAPPRPKKYIKGSILLQ----HNSNYGDLVGKEPN 198


>02_03_0143 +
           15685242-15686298,15688167-15688265,15688998-15689072,
           15689309-15689364,15689786-15689875
          Length = 458

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 479 SHKTIRLREKFENTYTNKKYSYHFSSV*LIIK*SNVVNN*YVIHLFSMVIKFNILKS 649
           S +T+ LRE + +   N   S HFS + L +  S  + + Y I++ + ++++  L+S
Sbjct: 342 STQTVLLRESYNSINDNVVVSQHFSRLCLSVSFSTSLASRYCIYILATLMRWLHLQS 398


>03_06_0233 +
           32530174-32530492,32531081-32531127,32531277-32531413,
           32531673-32531841,32532598-32532885,32533021-32533107,
           32533454-32534152,32534244-32534735
          Length = 745

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 165 EVKFLNIKHSFTI*SRVYFI-DFIKWFEYFHVVDSLRDNEIKTN 293
           EV+ L ++ +FT   +V+FI  F+KW E+  + D LR   ++++
Sbjct: 145 EVEHLLMRKTFT--RKVFFILIFLKWVEFDRLTDLLRARTVESD 186


>04_03_0784 -
           19610370-19611548,19611830-19611919,19612001-19612076,
           19612917-19613134,19613333-19613548,19613974-19614159,
           19614242-19614364,19614456-19614571,19615126-19615588
          Length = 888

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +3

Query: 315 LETKQGNIFNRFV*LDILSFGKIKSSSKCKA*HEGKSVKTMNKISSC*IRQHSRKVTKQS 494
           +E    ++FN    L IL  G++  S       +   +   + + S  I +  RK+    
Sbjct: 683 IEKAHPDVFNMM--LQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDL 740

Query: 495 DYEKSLKTLTRIKNIVT 545
           DY++   +  RIK++VT
Sbjct: 741 DYDEKDTSYNRIKSLVT 757


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,239,815
Number of Sequences: 37544
Number of extensions: 243349
Number of successful extensions: 331
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)