Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0019
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.90 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 277 LSRKLSTT*KYSNHLIKSIK*TRD 206
           L  KL TT +Y+NHL  S   +RD
Sbjct: 76  LMNKLPTTPEYNNHLYGSTPDSRD 99


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  FGKLNEICIPLIDCVLKKIASIN 117
           F K +E     +DC+LKK+  +N
Sbjct: 52  FDKNDEKLACYVDCMLKKVGFVN 74


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 234 KWFEYFHVVDSLRDNEIKTNNFLCRLLLE 320
           K   Y H +  +  N IKT   +C+ L+E
Sbjct: 65  KGVTYKHTIIEMDSNPIKTALSVCKSLIE 93


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 328 CFVSRSRRHKKLLVLISLSRKLSTT 254
           C V+ S   KKL   ++  RK STT
Sbjct: 349 CSVTNSPHQKKLRFHLAKERKASTT 373


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 222 IDFIKWFEYFHVVDSLRDNEIKTNNFLCRLLLETK 326
           ++  K + YF   D+L +N +   NF   + L  K
Sbjct: 456 VNIDKLYTYFDKCDTLINNAVAVENFKGGMYLRLK 490


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 222 IDFIKWFEYFHVVDSLRDNEIKTNNFLCRLLLETK 326
           ++  K + YF   D+L +N +   NF   + L  K
Sbjct: 456 VNIDKLYTYFDKCDTLINNAVAVENFKGGMYLRLK 490


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 120 LSFLVSTDVFFTRVIEV 170
           +S L+S  VFF  V+E+
Sbjct: 280 ISILISLHVFFLLVVEI 296


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 120 LSFLVSTDVFFTRVIEV 170
           +S L+S  VFF  V+E+
Sbjct: 280 ISILISLHVFFLLVVEI 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,316
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)