Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0019
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58920.1 68416.m06566 F-box family protein contains F-box dom...    28   5.1  
At2g31170.1 68415.m03805 tRNA synthetase class I (C) family prot...    27   8.9  

>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 470

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 423 FFPRVKLCILSSILFYQMRGCRVRQIY*ICFLVSSLGVGDIR 298
           F P ++   L SI F  +RGC  + +   C ++ +L + D++
Sbjct: 159 FLPGLESLFLKSIWFSDLRGCAFQTLLSACPVLKTLTIYDVQ 200


>At2g31170.1 68415.m03805 tRNA synthetase class I (C) family protein
           similar to cysteine-tRNA ligase [Escherichia coli]
           GI:41203; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 563

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +3

Query: 468 HSRKVTKQSDYEKSLKTL-TRIKNIVTI 548
           H+RK  KQ+  E+SLK L T I++++TI
Sbjct: 448 HTRKGKKQARREESLKALETTIRDVLTI 475


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,229
Number of Sequences: 28952
Number of extensions: 234347
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)