Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    40   0.001
01_06_1287 + 36004909-36006279                                         29   2.8  
06_01_0205 + 1564578-1564875,1564979-1565204,1571362-1571503,157...    29   3.7  
01_06_1015 + 33819203-33821827                                         27   8.5  

>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +2

Query: 107 MKTRFNTYDIICMITELQRLIGMRVNQVYDIDNRTYVIRLQRS 235
           +K R  T D+   +  L+RLIGMR++ VY I  +TY+ +L  S
Sbjct: 2   VKARMTTADVAAEVKCLRRLIGMRLSNVYGITPKTYLFKLMNS 44



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 253 VLESGNRFHTTQFEWPKNVAPSGFTMKV 336
           ++ESG R HTTQ+   K+  PSGFT+K+
Sbjct: 59  LMESGVRLHTTQYVRDKSTTPSGFTLKL 86


>01_06_1287 + 36004909-36006279
          Length = 456

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 224 LQRSEEKSVL-Y*NLVTGFIQHSLSGQRMSLPQGSP*RLVLSFN-MVTFSTAIQLN 385
           LQ + E +V+ Y  L+ GF+++ +SG    L +  P R V+S+N M+  S+   LN
Sbjct: 99  LQDTREPNVVSYTALIAGFLKNGMSGDAARLFRCMPERNVISWNAMIGGSSKAGLN 154


>06_01_0205 +
           1564578-1564875,1564979-1565204,1571362-1571503,
           1572273-1572803
          Length = 398

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 362 MSPY*MTKLTFMVNPEGATFFGHSNC 285
           MS    T+LT    P G TFFGH  C
Sbjct: 62  MSAVNRTELTMAQPPYGITFFGHPTC 87


>01_06_1015 + 33819203-33821827
          Length = 874

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 308 SLPQGSP*RLVLSFNMVTFSTAIQLNPSFKVSESIALKIVQNCPY 442
           S+  GS   ++L   +   +T+I+  PS   S  +   ++QNCPY
Sbjct: 442 SIESGSFDHMMLLKLLDLSTTSIKCLPSLPASRELCHLLLQNCPY 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,296
Number of Sequences: 37544
Number of extensions: 281681
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)