Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)                     28   6.5  
SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38)           28   6.5  
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)
          Length = 348

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 307 HSLATQTVLYETCYQILIQNTLLLGSLQTYHIR 209
           H      V+  TC +  +QNT LLG +   H R
Sbjct: 262 HVTVQDAVVAVTCVECSMQNTALLGCMNALHTR 294


>SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38)
          Length = 354

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 RFNTYDIICMITELQRLIGMRVNQVYDIDNRTYVIRL 226
           RFNT+ + CM   L+R +GM+   V    N   V  L
Sbjct: 167 RFNTF-LACMFRRLKRKLGMKATDVSSTTNLVVVCGL 202


>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 307 HSLATQTVLYETCYQILIQNTLLLGSLQTYHIR 209
           H      V+  TC +  +QNT LLG +   H R
Sbjct: 277 HVTVQDAVVAVTCVECSMQNTALLGCMNALHTR 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,906,013
Number of Sequences: 59808
Number of extensions: 359189
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)