Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006001-1|AAH06001.1|  398|Homo sapiens Unknown (protein for IM...    60   6e-09
AK000913-1|BAA91420.1|  518|Homo sapiens protein ( Homo sapiens ...    60   6e-09
BC056687-1|AAH56687.1|  426|Homo sapiens SDCCAG1 protein protein.      48   3e-05
AY028899-1|AAK30024.1| 1624|Homo sapiens ATP-binding cassette A9...    32   1.8  
AF423346-1|AAN32752.1| 1624|Homo sapiens ATP-binding cassette su...    32   1.8  
AF423307-1|AAN32751.1| 1624|Homo sapiens ATP-binding cassette su...    32   1.8  

>BC006001-1|AAH06001.1|  398|Homo sapiens Unknown (protein for
           IMAGE:4094709) protein.
          Length = 398

 Score = 60.1 bits (139), Expect = 6e-09
 Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 MKTRFNTYDIICMITELQR-LIGMRVNQVYDIDNRTYVIRLQRSEEKSVL 253
           MK+RF+T D+  ++ EL   L+GMRVN VYD+DN+TY+IRLQ+ + K+ L
Sbjct: 1   MKSRFSTIDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATL 50



 Score = 49.6 bits (113), Expect = 8e-06
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +1

Query: 253 VLESGNRFHTTQFEWPKNVAPSGFTMKVSFVI 348
           +LESG R HTT+FEWPKN+ PS F MK + V+
Sbjct: 51  LLESGIRIHTTEFEWPKNMMPSSFAMKGNIVL 82


>AK000913-1|BAA91420.1|  518|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10051 fis, clone HEMBA1001281. ).
          Length = 518

 Score = 60.1 bits (139), Expect = 6e-09
 Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 MKTRFNTYDIICMITELQR-LIGMRVNQVYDIDNRTYVIRLQRSEEKSVL 253
           MK+RF+T D+  ++ EL   L+GMRVN VYD+DN+TY+IRLQ+ + K+ L
Sbjct: 1   MKSRFSTIDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATL 50



 Score = 48.0 bits (109), Expect = 3e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +1

Query: 253 VLESGNRFHTTQFEWPKNVAPSGFTMK 333
           +LESG R HTT+FEWPKN+ PS F MK
Sbjct: 51  LLESGIRIHTTEFEWPKNMMPSSFAMK 77


>BC056687-1|AAH56687.1|  426|Homo sapiens SDCCAG1 protein protein.
          Length = 426

 Score = 48.0 bits (109), Expect = 3e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +1

Query: 253 VLESGNRFHTTQFEWPKNVAPSGFTMK 333
           +LESG R HTT+FEWPKN+ PS F MK
Sbjct: 28  LLESGIRIHTTEFEWPKNMMPSSFAMK 54



 Score = 42.3 bits (95), Expect = 0.001
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +2

Query: 173 MRVNQVYDIDNRTYVIRLQRSEEKSVL 253
           MRVN VYD+DN+TY+IRLQ+ + K+ L
Sbjct: 1   MRVNNVYDVDNKTYLIRLQKPDFKATL 27


>AY028899-1|AAK30024.1| 1624|Homo sapiens ATP-binding cassette A9
            protein.
          Length = 1624

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -2

Query: 147  IMHMISYVLNLVFILRNVNYTIKNGIKKTKLWNWNTRILLLYDV 16
            I+  I YV +LVF+   +++  +NG K + +W++   I++++ +
Sbjct: 1108 ILCSIGYVSSLVFLTYVISFIFRNGRKNSGIWSFFFLIVVIFSI 1151


>AF423346-1|AAN32752.1| 1624|Homo sapiens ATP-binding cassette
            sub-family A member 9 protein.
          Length = 1624

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -2

Query: 147  IMHMISYVLNLVFILRNVNYTIKNGIKKTKLWNWNTRILLLYDV 16
            I+  I YV +LVF+   +++  +NG K + +W++   I++++ +
Sbjct: 1108 ILCSIGYVSSLVFLTYVISFIFRNGRKNSGIWSFFFLIVVIFSI 1151


>AF423307-1|AAN32751.1| 1624|Homo sapiens ATP-binding cassette
            sub-family A member 9 protein.
          Length = 1624

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -2

Query: 147  IMHMISYVLNLVFILRNVNYTIKNGIKKTKLWNWNTRILLLYDV 16
            I+  I YV +LVF+   +++  +NG K + +W++   I++++ +
Sbjct: 1108 ILCSIGYVSSLVFLTYVISFIFRNGRKNSGIWSFFFLIVVIFSI 1151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,693,273
Number of Sequences: 237096
Number of extensions: 1795971
Number of successful extensions: 7377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7377
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)