Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    67   8e-12
Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +2

Query: 107 MKTRFNTYDIICMITELQRLIGMRVNQVYDIDNRTYVIRLQRSEEKSVL 253
           MK RF   D+I   TEL++L GMRVN VYDIDN+TY+I+L R++EK+V+
Sbjct: 1   MKNRFTLVDVIAATTELKKLEGMRVNNVYDIDNKTYLIKLSRTDEKAVI 49



 Score = 35.9 bits (79), Expect = 0.022
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 253 VLESGNRFHTTQFEWPKNVAPSGFTMKV 336
           + ESG R H T  +WPK+  PS F+MK+
Sbjct: 50  LFESGVRLHQTFHDWPKSQTPSSFSMKL 77


>Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical
           protein C25F9.1 protein.
          Length = 431

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 91  INITQNEDEIQYIRYHMHDHRTAKIDWNESKPGL*YRQSYVCDTFAAIRGEECF 252
           I I  N    Q+I    ++ +   +DW    PG  YR  Y C T+  + G + +
Sbjct: 348 IKIKLNPHGKQFIGLFYYEDQYESVDWRRGYPG--YRFCYACSTYGVVLGHKIY 399


>AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical
           protein T21H3.4 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 205 IVYIINLVYSHSNQSLQFCDHAYDIVC 125
           + Y I L+ SH++  L   D  YD+ C
Sbjct: 127 VTYSIRLIVSHNSDELTEFDKIYDVTC 153


>Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical
           protein T04C10.2b protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 481 SNNKLLNMDILGIIWTILNNL*SNAFGHFKGWIKLDSCGKCHHIK 347
           ++N +   +I+ I+W  LN+   N    +K  + LD   KC H K
Sbjct: 47  THNPMAFTEIMSIVWKRLNDSGKNWRHVYKSLVLLDFLIKCGHEK 91


>Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical
           protein T04C10.2a protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 481 SNNKLLNMDILGIIWTILNNL*SNAFGHFKGWIKLDSCGKCHHIK 347
           ++N +   +I+ I+W  LN+   N    +K  + LD   KC H K
Sbjct: 47  THNPMAFTEIMSIVWKRLNDSGKNWRHVYKSLVLLDFLIKCGHEK 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,167
Number of Sequences: 27780
Number of extensions: 282463
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)