Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.1  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 302 RMSLPQGSP*RLVLSFNMVTFSTAIQLN 385
           R+SLP+G P    L F +V  S++  LN
Sbjct: 624 RLSLPKGQPQGFPLQF-LVVISSSNPLN 650


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 224 NVSHTYDCLYHKPGLLSFQSIFAVL*SCI*YRMY*ISSSFCVMLITLL 81
           ++ + Y  LYH   LL    +  VL   + +  Y   +  C M+I  L
Sbjct: 106 SIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESL 153


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 101 RKMKTRFNTYDIICMITELQRLIGMRVNQVY 193
           RK K     Y  + +  +LQR IG  V Q Y
Sbjct: 219 RKEKLATGIYQRLSLSFKLQRNIGYFVFQTY 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,341
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)