Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0017
         (662 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RLD9 Cluster: Amine oxidase, flavin-containing, putat...    38   0.16 
UniRef50_Q7RGS1 Cluster: Yersinia pestis AMVITR01, putative; n=4...    35   1.5  
UniRef50_Q7RNT5 Cluster: Putative uncharacterized protein PY0173...    34   2.7  
UniRef50_Q98162 Cluster: ORF4, putative viral coat protein dupli...    34   3.5  
UniRef50_Q823X9 Cluster: Polymorphic outer membrane protein E/F ...    33   4.6  
UniRef50_Q39504 Cluster: ORF484; n=2; Cylindrotheca fusiformis|R...    33   4.6  
UniRef50_Q5DBE9 Cluster: SJCHGC01974 protein; n=2; Eukaryota|Rep...    33   4.6  
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:...    33   4.6  
UniRef50_Q4XY64 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_Q7RLD9 Cluster: Amine oxidase, flavin-containing, putative;
            n=9; Plasmodium (Vinckeia)|Rep: Amine oxidase,
            flavin-containing, putative - Plasmodium yoelii yoelii
          Length = 4189

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
 Frame = -1

Query: 605  LLTFLYSKQIH*IQINSNQSQ*FLWLNNYHYYSITI---FFKCLRKAAVRYKLFVITIFF 435
            L+ F   K I+   INS+  + +++ NN   Y+  +   FFK ++K    Y+    T +F
Sbjct: 755  LINFCLKKNIYNNNINSHLYKHYIYYNNKKIYTYKMRNEFFKLIKKLRSFYEHISNTKYF 814

Query: 434  NATCYKVTTIYSFIYRKSNKFVYKYIQLSKKNLSKKYFTQLIY 306
            N    K   +Y+      N  + K  +   +   KK+F   IY
Sbjct: 815  NDPIIKKQFLYASFGEVINSEINKIKEQKHQIKKKKHFKTYIY 857


>UniRef50_Q7RGS1 Cluster: Yersinia pestis AMVITR01, putative; n=4;
           Plasmodium (Vinckeia)|Rep: Yersinia pestis AMVITR01,
           putative - Plasmodium yoelii yoelii
          Length = 440

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 57  SIYIVINSLFNFKYICC*VFDILIIMYNYAFYNVNKTNCLHVHLFISLYKHFYKLS 224
           +I  ++ SL+  KY      + L ++ NY F N NK    H+HL + +Y +F +++
Sbjct: 147 NIVTILISLYKLKYRNV---NFLKLVENYIFINKNKFKISHIHLILYIYAYFNRVN 199


>UniRef50_Q7RNT5 Cluster: Putative uncharacterized protein PY01730;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01730 - Plasmodium yoelii yoelii
          Length = 1692

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 190 LFHYISIFINYHISNNRTTTSKYFLFEINLYRNVCPLEL*INCVKYFLLRFF 345
           +FHYIS+  NY I++N      + + +I   +    +   +NC+ Y L+ FF
Sbjct: 658 IFHYISLEKNYIINSNMKNIVTWIILQIYFIKK--EINKIVNCLTYMLILFF 707


>UniRef50_Q98162 Cluster: ORF4, putative viral coat protein
           duplicate gene protein; n=1; Little cherry virus 1|Rep:
           ORF4, putative viral coat protein duplicate gene protein
           - Little cherry virus 1
          Length = 664

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 175 YMYTYLFHYISIFINYHISNNRTTTSKYFLFEINLYRNV 291
           Y Y     Y S   N+HI+NN  T S+ FL E+N  R+V
Sbjct: 394 YPYNLERPYTSDMTNHHINNNVLTNSQVFLSEVNGVRDV 432


>UniRef50_Q823X9 Cluster: Polymorphic outer membrane protein E/F
           family protein/autotransporter, putative; n=3;
           Chlamydophila|Rep: Polymorphic outer membrane protein
           E/F family protein/autotransporter, putative -
           Chlamydophila caviae
          Length = 927

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 YLFHYISIFINYHISNNRTTTSKY 258
           YLFH I  F+NYH+  + +TTS Y
Sbjct: 895 YLFHNIVAFLNYHLDLSSSTTSHY 918


>UniRef50_Q39504 Cluster: ORF484; n=2; Cylindrotheca fusiformis|Rep:
           ORF484 - Cylindrotheca fusiformis (Marine diatom)
          Length = 484

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = -1

Query: 536 LWLNNYHYYSITIFFKCLRKAAVRYKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKYI 357
           L+  NY +Y   IF   L K  +  +   I +F +    KV  I  F+   S+      I
Sbjct: 370 LFYYNYPFYLPNIFQTKLTKDKLEVRFKFIQVFTSVNIEKVFFIQEFLSSYSS-----VI 424

Query: 356 QLSKKNLSKKYFTQLIYNSRGH 291
              +KN  KKYF QL+   + H
Sbjct: 425 SNQRKNNIKKYFIQLVQLFKEH 446


>UniRef50_Q5DBE9 Cluster: SJCHGC01974 protein; n=2; Eukaryota|Rep:
           SJCHGC01974 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 138

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  YFYLCT*LKCKIYYLFTL*STRYLILSIYV-VKFSIF**LCTTMLFTM*IKQIVYMYTYL 192
           Y Y+C  + C IY    +    Y+ +SIY+ +   I+  +   +   + I   +Y+Y Y+
Sbjct: 52  YIYICIYI-CYIYIYMYIYIYIYIYISIYIYIYIYIYVYIYIYIYIYICIYMYIYIYIYI 110

Query: 193 FHYISIFINYHI 228
           + YI I+I  +I
Sbjct: 111 YIYIYIYIYIYI 122


>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
           Ymf77 - Tetrahymena pigmentosa
          Length = 1260

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -1

Query: 512 YSITIFFKCLRKAAVRYKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKYIQLSKKNL 336
           Y+I +    L+K   +  ++V  I       K++ IY ++Y  SNK++ KYI +   N+
Sbjct: 234 YTIFLLINILKKFINKLIIYVFNINNLIKNIKLSLIYIYLYIYSNKYINKYIYIIFNNI 292


>UniRef50_Q4XY64 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 47

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 13  KYFYLCT*LK-CKIYYLFTL*STRYLILSIYVVKFSIF**LC 135
           KY Y+C  L+ C + ++F +   R L    + +KFSIF  LC
Sbjct: 5   KYIYICENLRICMLRFIFFIPRLRILYFLSFYIKFSIFISLC 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,770,177
Number of Sequences: 1657284
Number of extensions: 10242914
Number of successful extensions: 23941
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23763
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)