Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0017
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   3.2  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   5.6  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   5.6  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   7.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.7  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 524 NYHYYSITIFFKCLRKAAVRYKLFVITIFFNATCYK 417
           N  +  +T  F C+  +A R +L  I    NA CY+
Sbjct: 443 NGEFVQVTSTFLCIYDSAKRSRLVYIEKITNAACYQ 478


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 464 YKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKYIQLSKKNLSKKYFT 318
           YK+ ++    N+ CY       FI RKS KF +K     K+ L++ + T
Sbjct: 30  YKVIIVDNLCNS-CYDAVARVEFIVRKSIKF-FKLDLRDKEGLAQIFDT 76


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 241 TTTSKYF-LFEINLYRNVCPL 300
           T  S YF  + +NLYR+ CPL
Sbjct: 50  TERSDYFSYYRVNLYRSSCPL 70


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 488 CLRKAAVRYKLF--VITIFFNATCYKVTTIYSFIYRKSNKFVYKYIQLSK 345
           C++   +   LF  +  ++F ++ Y   ++ S I  + NKF Y    LS+
Sbjct: 224 CVKPKKILVDLFHRINIVYFRSSIYDEQSLTSLILARLNKFSYPNYVLSR 273


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 105  C*VFDILIIMYNYAFYNVNKTNCLHVHLFIS 197
            C VF++L  ++NYA Y     N LH+  +I+
Sbjct: 1924 CLVFEVLHAVHNYAIYG----NYLHLEEYIN 1950


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 6/35 (17%), Positives = 20/35 (57%)
 Frame = -1

Query: 533 WLNNYHYYSITIFFKCLRKAAVRYKLFVITIFFNA 429
           W+  ++Y++I++ +  L    + Y++  + +  N+
Sbjct: 300 WMTFFYYFAISLAYMVLHTLVLLYQIITLNVTVNS 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,570
Number of Sequences: 5004
Number of extensions: 50293
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)