Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0017
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267...    28   7.6  

>03_05_0829 +
           28025760-28025846,28026366-28026473,28026721-28026752,
           28026823-28026873,28027528-28027589,28027663-28027924,
           28028634-28028899,28029138-28029232,28029772-28029948
          Length = 379

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 163 KQIVYMYTYLFHYISIFINYHISNNRTTTSKYFLFEINLYRNVCPLEL*INCVKYFLLRF 342
           +Q+V  Y YL  Y+ +     + N    + KYF F   +   +  +      V +FL+R 
Sbjct: 5   RQLVLTYLYLLIYVCLSSGVILFNKWVLSPKYFKFPFPITLTMIHMAF-SGVVTFFLVRV 63

Query: 343 F 345
           F
Sbjct: 64  F 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,922
Number of Sequences: 37544
Number of extensions: 213365
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)