Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0017
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    31   0.73 
AF077546-2|AAC26313.2|  293|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    29   3.9  
AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    27   9.0  

>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 22/93 (23%), Positives = 44/93 (47%)
 Frame = -1

Query: 635 VFI*GCIYLILLTFLYSKQIH*IQINSNQSQ*FLWLNNYHYYSITIFFKCLRKAAVRYKL 456
           +FI   + L L+ + +    H + +N+  S  F+++   + +S  I F  L    V  + 
Sbjct: 66  IFIIVVVLLFLIMWHWDDSSHQLALNNTVSDYFIFI---YCFSFFIIFYILH---VLQQT 119

Query: 455 FVITIFFNATCYKVTTIYSFIYRKSNKFVYKYI 357
           F + +F  A    +  I+SF++      V+KY+
Sbjct: 120 FHVILFLLAILNSLKYIFSFLFLNIQSSVHKYL 152


>AF077546-2|AAC26313.2|  293|Caenorhabditis elegans Hypothetical
           protein T08E11.7 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 560 NSNQSQ*FLWLNNYHYYSITIF 495
           NS++ + FLW N+ H + ITIF
Sbjct: 263 NSDEEEDFLWTNDSHTFRITIF 284


>AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical
           protein T10B11.8 protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 196 HYISIFINYHISNNRTTTSKYFLFEINLYRNVCPLEL*INCVK 324
           HY + F NY + N +TT+  +    +N+ R + PL+   N +K
Sbjct: 346 HYTNSFDNYRMGNEQTTSYDHHPIPVNV-RRLYPLQSHKNIIK 387


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +3

Query: 24  LMYVIKM*NLLSIYIVINSLFNFKYICC*VFDILIIMYNYAFYNVNKTNCLHVHLFISLY 203
           ++Y++ +   +SIY+V   +  ++Y     F IL ++Y    + +   + L   L   + 
Sbjct: 122 ILYIVHVLKEISIYVVTRRILKYQYKIYNPFSILGLVYGIIIFCMAIFSVLSALLHFPIV 181

Query: 204 KHFYKLSY 227
           K    L+Y
Sbjct: 182 KKIRALTY 189


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = -1

Query: 536 LWLNNYHYYSITIFFKCLRKAAVRYKLFVITIFFNATCYKVTTIYSFIYRKSNKFVYKYI 357
           LW N Y Y  + + F CL      Y    I I F   C K       +   + + +Y Y 
Sbjct: 5   LWGNYYRYLILIVGFLCLASVCSNY----IIINFTFICMKEDNSEMHLVNGTMRSIYDYT 60

Query: 356 QLSKK 342
              KK
Sbjct: 61  SDEKK 65


>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 374 FVYKYIQLSKKNLSKKYF 321
           FVY+Y+ + + N +KKYF
Sbjct: 110 FVYRYLVIHESNFTKKYF 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,307,898
Number of Sequences: 27780
Number of extensions: 264371
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)