Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0016
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.12 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 310 INNCFTVVVLVRNLNESNKXXXXXXXLDAC-VSF*LFPVNLEFCENYDETF 459
           +N+ F+ V L RN  ++ K       + AC + F L+P++++ C  Y E+F
Sbjct: 89  LNHKFSSVTLYRN--KTVKYSARMHAIIACQMEFQLYPMDIQICPIYIESF 137


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 504 LTVFIWSHGFSLYLLKCFIVIFTEFKINR 418
           L   I+S   S YL   F+++FT +KI R
Sbjct: 204 LGYLIFSSTISFYL-PLFVMVFTYYKIYR 231


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 427 LEFCENYDETFQ*IQTKTM*PNKNGQTK 510
           L+FC N       ++ K +  +KNGQ K
Sbjct: 168 LQFCHNAGIVHADVKPKNILMSKNGQPK 195


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 197 SCEIKYNFYDQIKFRKAYF 141
           SC    N+Y+   ++K Y+
Sbjct: 310 SCNYSNNYYNNNNYKKLYY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,490
Number of Sequences: 438
Number of extensions: 2335
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)