Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0015
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0140 + 12255418-12255512,12257514-12257793 103 5e-23
08_02_1181 - 24985963-24986242,24987109-24987197 102 1e-22
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 87 6e-18
01_06_0193 - 27359575-27361962 27 4.9
01_03_0147 - 13125065-13126679,13126802-13127664 27 4.9
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 27 6.5
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 27 6.5
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 103 bits (248), Expect = 5e-23
Identities = 44/62 (70%), Positives = 53/62 (85%)
Frame = +3
Query: 75 IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 254
+VTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+
Sbjct: 16 VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRS 75
Query: 255 FP 260
P
Sbjct: 76 VP 77
Score = 30.3 bits (65), Expect = 0.70
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +2
Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
ND+ED+ +L++LVT VP +KGL T+ V+
Sbjct: 89 NDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 102 bits (245), Expect = 1e-22
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +3
Query: 69 KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 248
+ +VTREYT+NLHKRLH FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+
Sbjct: 12 EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGI 71
Query: 249 RNFP 260
R+ P
Sbjct: 72 RSVP 75
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +2
Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
ND+ED+ +L++LVT VP +KGL T+ VD
Sbjct: 87 NDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 87.0 bits (206), Expect = 6e-18
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 18/89 (20%)
Frame = +3
Query: 48 KKRQISHKR--IVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKF 173
KKR ++ +VTREYT+NLHKRLHG FKK+AP AIKEIRKF
Sbjct: 4 KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63
Query: 174 AEKQMGTPDIRVDTRLNKFLWSKGVRNFP 260
A+K MGT DIR+D +LNK +W+ G+R+ P
Sbjct: 64 AQKAMGTTDIRIDVKLNKAIWTNGIRSVP 92
Score = 30.7 bits (66), Expect = 0.53
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +2
Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
ND+ED+ +L++LVT +P +KGL T+ V+
Sbjct: 104 NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136
>01_06_0193 - 27359575-27361962
Length = 795
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 234 WSKGVRNFPSVSV*GFHEDVMMMKIPHISY 323
WS+G R SVS ED +KIPH Y
Sbjct: 316 WSRGCRPTFSVSCGQQREDFTFVKIPHGDY 345
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 268 DTEGKFLTPLDQRNLFKRVSTRMSGVPICFS 176
+T +LT L RNL + + R +G P C++
Sbjct: 477 ETARSYLTDLISRNLIQALHLRHNGTPSCYT 507
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 114 LHGVGFKKRAPRAIKEIRKFAEKQMG--TPD-IRVDTRLNKFLWSKGVRNFPSVS 269
+ GV K R R I+E+ + + G T D + VDT L +F+W +G +P++S
Sbjct: 69 IEGVSHKIR--RQIEELERAGGVESGALTVDGVPVDTYLTRFVWDEG--KYPTMS 119
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 96 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 200
+N+ ++G GF A + E+ K A KQ+ PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,442
Number of Sequences: 37544
Number of extensions: 179383
Number of successful extensions: 382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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