Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0015
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   3e-06
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  37   0.006
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   3.8  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 20/34 (58%), Positives = 28/34 (82%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 394
           N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 816 NEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +3

Query: 48  KKRQISHKRIVTREYTVNLHKRLHGVGFKKR 140
           KK + +   +VTREYT+NLHKR+HG+    R
Sbjct: 776 KKGRSAINEVVTREYTINLHKRIHGMNVPYR 806


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTYVPVASIKGLQTE 376
           N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 16  NEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 247 TPLDQRNLFKRVSTRMSGVPICFSANF 167
           TP D  N   R  T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,619
Number of Sequences: 59808
Number of extensions: 235235
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)