Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0015
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   101   2e-22
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    46   9e-06
AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    27   7.7  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  101 bits (243), Expect = 2e-22
 Identities = 43/71 (60%), Positives = 58/71 (81%)
 Frame = +3

Query: 48  KKRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 227
           KK + +   +VTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT+LNK
Sbjct: 7   KKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNK 66

Query: 228 FLWSKGVRNFP 260
           F+WSKG++N P
Sbjct: 67  FIWSKGIKNVP 77



 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +2

Query: 242 GSQKFPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 394
           G +  P+          N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 72  GIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +2

Query: 242 GSQKFPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 394
           G +  P+          N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 20  GIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +3

Query: 186 MGTPDIRVDTRLNKFLWSKGVRNFP 260
           M T D+RVDT+LNKF+WSKG++N P
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVP 25


>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 1   RHETKLKITMAKPKGERKGKSAINELLPVNIQLIYTNDFMVLDLKS 138
           RH+ K  +   K + + +    +N+ LP  IQL++ N  + L +++
Sbjct: 172 RHDKKTPVYQLKCEVKGQTNLVVNKSLPGGIQLVFMNIILYLKIQT 217


>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
           protein DY3.7 protein.
          Length = 922

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 57  QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 179
           +I+H++   +    NL +++ G GF  R  R + +++   E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 57  QISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 179
           +I+H++   +    NL +++ G GF  R  R + +++   E
Sbjct: 171 EINHRKWRVKRDAENLSEQMQGCGFSSRVRREMTDVQNSGE 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,099,361
Number of Sequences: 27780
Number of extensions: 172886
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)