Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0014
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    29   0.56 
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   5.2  

>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 302 LRRFKTRCCSRFGLHFQVLMTCMNS 376
           ++RF++RCC R GL F + +   +S
Sbjct: 568 IQRFRSRCCFRLGLLFSIFVVGFSS 592


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 548 LIRCVFL*LYFSKIVLFTTLSNLPLSK 628
           L+ C+FL LYF+   L T +S L   K
Sbjct: 313 LVNCLFLPLYFASSGLKTNISTLNTGK 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,795
Number of Sequences: 5004
Number of extensions: 31643
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)