Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0014
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  

>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 386 CKSWSSYKSSTLESEDRIYYNSGF*NVLNLIKIVYIYLNSYLFR 255
           CKS S YKSS L     +Y +S       L K  ++Y +S L++
Sbjct: 752 CKSSSLYKSSPLHKSSSLYKSSYLYKSSYLYKSSFLYKSSSLYK 795



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 383 KSWSSYKSSTLESEDRIYYNSGF*NVLNLIKIVYIYLNSYLFR 255
           KS   YK S+L     +Y +S      +L K  Y+Y +SYL++
Sbjct: 741 KSSPLYKCSSLCKSSSLYKSSPLHKSSSLYKSSYLYKSSYLYK 783



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 383 KSWSSYKSSTLESEDRIYYNSGF*NVLNLIKIVYIYLNSYLFRMHVRNG 237
           KS S YKSS L     +Y +S      +L K  ++Y +S L++ +V  G
Sbjct: 765 KSSSLYKSSYLYKSSYLYKSSFLYKSSSLYKSSFVYKSSPLYKSYVYLG 813


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,345
Number of Sequences: 59808
Number of extensions: 229553
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)