Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0014
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   4.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   4.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.5  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      21   7.5  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 370 HTSHQHLKVKTESTTT 323
           +TSHQHL+     T T
Sbjct: 123 YTSHQHLRTHLRGTLT 138


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 130 GSGGWSGDAKCCFNERFD*GPVTCYRY 210
           G GG  G  KC  NE F      C R+
Sbjct: 27  GFGGLGGRGKCPSNEIFSRCDGRCQRF 53


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 130 GSGGWSGDAKCCFNERFD*GPVTCYRY 210
           G GG  G  KC  NE F      C R+
Sbjct: 27  GFGGLGGRGKCPSNEIFSRCDGRCQRF 53


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 429 YEFYELIESIHGMFLQVMEFIQVIN 355
           Y+F ++ E     FL+   F+ +IN
Sbjct: 389 YDFNDIFEKDQASFLERERFLGIIN 413


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 429 YEFYELIESIHGMFLQVMEFIQVIN 355
           Y+F ++ E     FL+   F+ +IN
Sbjct: 389 YDFNDIFEKDQASFLERERFLGIIN 413


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 389 FCKSWSSYKSSTLESEDRIYYNSGF*NV 306
           FC  W++Y+SS   + + +  +  F +V
Sbjct: 7   FCLRWNNYQSSITSAFENLRDDEDFVDV 34


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 389 FCKSWSSYKSSTLESEDRIYYNSGF*NV 306
           FC  W++Y+SS   + + +  +  F +V
Sbjct: 7   FCLRWNNYQSSITSAFENLRDDEDFVDV 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,734
Number of Sequences: 438
Number of extensions: 2355
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)