Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0013
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 93 2e-20
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 93 2e-20
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 2.1
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 2.1
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 3.6
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 25 8.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.4
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 8.4
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 8.4
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 93.5 bits (222), Expect = 2e-20
Identities = 42/84 (50%), Positives = 54/84 (64%)
Frame = +3
Query: 3 VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
VI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKY 109
Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
+ KID+HLYH+LY++AKGN FK
Sbjct: 110 RESGKIDKHLYHTLYLEAKGNTFK 133
Score = 33.5 bits (73), Expect = 0.018
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 230 EGEG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328
E +G + KR L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 93.5 bits (222), Expect = 2e-20
Identities = 42/84 (50%), Positives = 54/84 (64%)
Frame = +3
Query: 3 VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
VI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKY 109
Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
+ KID+HLYH+LY++AKGN FK
Sbjct: 110 RESGKIDKHLYHTLYLEAKGNTFK 133
Score = 33.5 bits (73), Expect = 0.018
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 230 EGEG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328
E +G + KR L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -3
Query: 301 LLSLLPVDVLHEHTLVLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLRTL-----CLCTH 137
L+++ V H +LVL L ++ CLS+++++ Y R + L C C
Sbjct: 121 LVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSCFS 180
Query: 136 SSFCGIRA 113
+F G+ A
Sbjct: 181 GAFGGLIA 188
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -3
Query: 403 FLLLGGNT-----FLAALACLLYFIAAGL 332
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 3.6
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = -3
Query: 391 GGNTFLAALACLLYFIA------AGLSLVAKHLRPGLLSLLPVDVLHEHTLVLNTLPFAF 230
GG F + L C L ++ + ++AKH R L DV+ +L+++ LPF F
Sbjct: 573 GGVLFFSILFCALQSLSEIANMFSQRPIIAKH-RASALYHPAADVIS--SLIVD-LPFRF 628
Query: 229 M*SEWYRCLSIFLAVLYFRSNFLRT 155
+ +S+F VLYF +N RT
Sbjct: 629 I------NISVFSIVLYFLTNLKRT 647
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 289 LPVDVLHEHTLVLNTLPFAFM*SEWY--RCLSIFL 191
LPV VL + + ++N++ + EW+ RC S F+
Sbjct: 789 LPVSVLSKDSDLVNSVSYLHNSMEWFLQRCFSRFM 823
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 373 AALACLLYFIAAGLSLVAKHLRPGLLSLLP 284
A L CLL IAA L+ H+ P L LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 99 FSXQSHSDDPFYVPLCFCGHGR 34
FS + +D+P Y P+ CG G+
Sbjct: 37 FSQCAITDEPLYPPIVSCGLGK 58
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 436 GFVFSSEGLQQFLLLGGNTFLAA 368
G VFS + L +F+ GGN F+ A
Sbjct: 83 GPVFSPKSLLEFVQSGGNLFVVA 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,134
Number of Sequences: 5004
Number of extensions: 32291
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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