BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0013 (498 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 101 3e-22 03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 101 3e-22 03_02_0050 + 5272471-5274861 29 1.6 04_04_1687 - 35365766-35366356,35367137-35368135 29 2.7 02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 27 6.3 01_06_0641 - 30782235-30782423,30782498-30782605,30782848-307829... 27 8.4 >03_05_0125 - 21039767-21039791,21039876-21039922,21040220-21040533, 21040613-21040735,21041599-21041710 Length = 206 Score = 101 bits (242), Expect = 3e-22 Identities = 44/84 (52%), Positives = 56/84 (66%) Frame = +3 Query: 3 VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182 +IKKP +HSR+R R+ EA++KGRH G+GKRRGT AR+P K LW Sbjct: 50 IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109 Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254 AKKID+H+YH +YMK KGN+FK Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFK 133 Score = 41.5 bits (93), Expect = 4e-04 Identities = 20/31 (64%), Positives = 24/31 (77%) Frame = +2 Query: 236 EG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328 +G ++KRVLME IH+ KAEKAR K LSDQ Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158 >03_02_0934 - 12513810-12513834,12513918-12513970,12514212-12514525, 12514608-12514730,12515710-12515821 Length = 208 Score = 101 bits (242), Expect = 3e-22 Identities = 44/84 (52%), Positives = 56/84 (66%) Frame = +3 Query: 3 VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182 +IKKP +HSR+R R+ EA++KGRH G+GKRRGT AR+P K LW Sbjct: 50 IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109 Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254 AKKID+H+YH +YMK KGN+FK Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFK 133 Score = 41.5 bits (93), Expect = 4e-04 Identities = 20/31 (64%), Positives = 24/31 (77%) Frame = +2 Query: 236 EG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328 +G ++KRVLME IH+ KAEKAR K LSDQ Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158 >03_02_0050 + 5272471-5274861 Length = 796 Score = 29.5 bits (63), Expect = 1.6 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -3 Query: 400 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLNTLP 239 LLL L+ +CL + L +HL P LLS +P+D L H H +L LP Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHLP 133 >04_04_1687 - 35365766-35366356,35367137-35368135 Length = 529 Score = 28.7 bits (61), Expect = 2.7 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +2 Query: 5 HQETCSSPLPRPCPQKHR 58 H E C +PLP P P HR Sbjct: 53 HAEQCPAPLPDPLPSAHR 70 >02_03_0297 - 17408902-17409045,17409134-17409304,17410563-17410664, 17412605-17412718,17413095-17413178,17413669-17413808, 17414429-17414560,17415430-17415618,17415736-17415801, 17415905-17415938 Length = 391 Score = 27.5 bits (58), Expect = 6.3 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 374 RGACVPPLLYCGGP 333 +GACV P+ YCG P Sbjct: 152 KGACVDPVAYCGTP 165 >01_06_0641 - 30782235-30782423,30782498-30782605,30782848-30782959, 30783429-30783526,30784249-30784336,30784780-30784875, 30785101-30785171,30786003-30786075,30787023-30787324, 30787418-30787503,30788024-30788084,30789386-30789688 Length = 528 Score = 27.1 bits (57), Expect = 8.4 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -1 Query: 168 IFLEPFVFVPIVPSVAYAHWQYLFSXQSHS 79 IF +P++ +PI A WQ+L + S++ Sbjct: 380 IFRQPYIILPIHGDFLIAEWQHLQNDSSYT 409 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,582,959 Number of Sequences: 37544 Number of extensions: 251281 Number of successful extensions: 767 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 765 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1047416480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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