Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0013
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 3e-26
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 3.7
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 3.7
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59) 28 4.9
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59) 28 4.9
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 27 6.5
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 27 6.5
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 115 bits (276), Expect = 3e-26
Identities = 54/84 (64%), Positives = 59/84 (70%)
Frame = +3
Query: 3 VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
+IKKP VHSRARVRK EAR KGRH G GKR+GTANARMPQK +W
Sbjct: 78 IIKKPEIVHSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKY 137
Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
AKKID H+YHSLYMK+KGNVFK
Sbjct: 138 REAKKIDNHMYHSLYMKSKGNVFK 161
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/70 (40%), Positives = 39/70 (55%)
Frame = +2
Query: 230 EGEG*CVQDKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLL 409
+ +G ++KRVLMEYIH+KKAEKAR+K+LSDQ +L
Sbjct: 154 KSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDML 213
Query: 410 QTFAREDEAA 439
+A+E+EAA
Sbjct: 214 SAYAKEEEAA 223
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 33 RARVRKNTEARRKGRHCGFGKRRGTANAR 119
+A RK RR+ R G K+R TANAR
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 403 FLLLGGNTFLAALAC 359
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 387 PPRRRNCCRPSLEKTKPRLPLRSK 458
PP +N +P ++KTKP PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 210 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 109
D + S Q C FLEP VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225
>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 303 AFSAFFLWMYSMSTRLS*THYPS 235
+F AFF W+YS+ RLS PS
Sbjct: 414 SFKAFFQWLYSIILRLSDEPVPS 436
>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 303 AFSAFFLWMYSMSTRLS*THYPS 235
+F AFF W+YS+ RLS PS
Sbjct: 414 SFKAFFQWLYSIILRLSDEPVPS 436
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 162 LEPFVFVPIVPSVAY--AHWQYLFSXQSHSDDPFYVPLCFCGH 40
++ + F+P V + W++ + H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 225 RVSGIDACQSSWQFCTSGAIFLEPFVF 145
RV+G+ S WQ CT+ A L+ VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 162 LEPFVFVPIVPSVAY--AHWQYLFSXQSHSDDPFYVPLCFCGH 40
++ + F+P V + W++ + H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,355
Number of Sequences: 59808
Number of extensions: 265603
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -