Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0013
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   111   4e-25
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    27   10.0 
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF022979-7|AAB69903.1|  295|Caenorhabditis elegans Serpentine re...    27   10.0 

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  111 bits (266), Expect = 4e-25
 Identities = 50/84 (59%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
           +I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW              
Sbjct: 50  IIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRY 109

Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
             AKK+D+HLYH LY++AKGN FK
Sbjct: 110 RDAKKLDKHLYHELYLRAKGNNFK 133



 Score = 31.5 bits (68), Expect = 0.35
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 251 QDKRVLMEYIHRKKAEKARTKMLSDQ 328
           ++K+ L+EYI +KK E  R K L+DQ
Sbjct: 133 KNKKNLIEYIFKKKTENKRAKQLADQ 158


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 354 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 458
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 401 PPSWRQYVPRGACVPPL 351
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 375 RNVLPPRRRNCCRPSLEKTKPRLP 446
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 237 SPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 145
           SPSC    +  C  S  FC+  + F+E   F
Sbjct: 330 SPSCHPHILSICSCSTTFCSKCSAFIEQLEF 360


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/86 (23%), Positives = 35/86 (40%)
 Frame = -1

Query: 303 AFSAFFLWMYSMSTRLS*THYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVFVPIVPSV 124
           A S F L +Y    R+    +         I    S + + T  +  L+P++   IV ++
Sbjct: 58  AISHFVLMLYDCDLRMIDMAFAIWPIVTVTIALVFSYFSYSTHSSTSLKPYIAHHIVMAI 117

Query: 123 AYAHWQYLFSXQSHSDDPFYVPLCFC 46
           +Y    +LF+  +     F   L FC
Sbjct: 118 SYCFCLFLFAMFAWKQHFFVEILSFC 143


>AF022979-7|AAB69903.1|  295|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 53 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
 Frame = -3

Query: 364 ACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLNTLP-----------FAFM*SE 218
           A L+ F+   LS V+KH       ++ +D++      +NT P           FA    E
Sbjct: 16  AILMIFMIVLLS-VSKHFTNSFYRVITMDIILNLLCWVNTWPSRMVFREDGFGFARFLYE 74

Query: 217 WYRC---LSIFLAVLYFRSNFLRTLCLCTH 137
           +Y     +S FL+ ++F      T+C+C H
Sbjct: 75  FYNKSFDVSFFLSNVFFHVQSASTICICCH 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,019,771
Number of Sequences: 27780
Number of extensions: 194199
Number of successful extensions: 541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)