Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0013
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.25 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.25 
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   4.1  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 384 LPPRRRNCCRPSLEKTKPRLPLRSK 458
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 384 LPPRRRNCCRPSLEKTKPRLPLRSK 458
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 211 RCLSIFLAVLYFRSNFLRTLCLC 143
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 324 SLSIFVLAFSAFFLWMYSMSTRLS*THYPSPSCRVSGIDACQSSWQ 187
           +LSI      A F+W+Y++S  L            +G  +C  SW+
Sbjct: 9   ALSIRHAVILASFVWIYALSLSLPPLFGWGSYGPEAGNVSCSVSWE 54


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 376 LAALACLLYFIAAGLSLVAKHLRPGL 299
           L  L+C+L+F+   + +   ++R GL
Sbjct: 205 LYQLSCILFFLIPMVFIAVLYIRIGL 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,824
Number of Sequences: 438
Number of extensions: 2757
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)