Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0013
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   101   2e-22
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   100   1e-21
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...    96   1e-20
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    29   1.7  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   2.3  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   4.0  
At5g67310.1 68418.m08488 cytochrome P450 family protein                27   5.3  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    27   5.3  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    27   5.3  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  101 bits (243), Expect = 2e-22
 Identities = 44/84 (52%), Positives = 55/84 (65%)
 Frame = +3

Query: 3   VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
           +I+KP  +HSR+R R   EA+RKGRH G+GKR+GT  AR+P K LW              
Sbjct: 50  IIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKY 109

Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
             +KKIDRH+YH +YMK KGNVFK
Sbjct: 110 RESKKIDRHMYHDMYMKVKGNVFK 133



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 236 EG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328
           +G   ++KRVLME IH+ KAEKAR K L+DQ
Sbjct: 128 KGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 43/84 (51%), Positives = 54/84 (64%)
 Frame = +3

Query: 3   VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
           +I+KP  +HSR+R R+   A+RKGRH G+GKR+GT  AR+P K LW              
Sbjct: 50  IIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKY 109

Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
              KKIDRH+YH +YMK KGNVFK
Sbjct: 110 RETKKIDRHMYHDMYMKVKGNVFK 133



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 236 EG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328
           +G   ++KRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 41/84 (48%), Positives = 53/84 (63%)
 Frame = +3

Query: 3   VIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXX 182
           +I+KP  +HSR+R RK   A+ KGRH G+GKR+GT  AR+P K LW              
Sbjct: 50  IIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKY 109

Query: 183 XTAKKIDRHLYHSLYMKAKGNVFK 254
              KKID+H+YH +YM+ KGNVFK
Sbjct: 110 RETKKIDKHMYHDMYMRVKGNVFK 133



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 236 EG*CVQDKRVLMEYIHRKKAEKARTKMLSDQ 328
           +G   ++KRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 192 KKIDRHLY-HSLYMKAKGNVFK 254
           KKID+ +Y H ++MK KG V+K
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYK 50


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 327  WSLSIFVLAFSAFFLWMYSMSTRL 256
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 9   KKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 113
           KK + + +  ++RKN + RR+G   G G RR  A+
Sbjct: 82  KKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116


>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 246 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 145
           H  S  C V+G D  + +W F  + AI  +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 30  SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 137
           SR+R R  + +R +GR     + R  + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 346  IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTL 257
            IA  L    KHL+P L+SL+P  V H EH L
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPL 1004


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,515,508
Number of Sequences: 28952
Number of extensions: 183241
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)