Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0012
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.9  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   8.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 225 CLLYMYIFCIIMYCLWY 175
           C+ Y Y   II+ C++Y
Sbjct: 284 CIYYFYCALIILLCIYY 300



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 225 CLLYMYIFCIIMYCLWY 175
           C  Y Y   II+ C++Y
Sbjct: 99  CTYYFYYAFIILLCVYY 115


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 573 VGAFTCRCPWGSSNP 617
           VG F C+CP G   P
Sbjct: 279 VGGFECKCPPGFVGP 293



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 564 SKWVGAFTCRCPWGSS 611
           +++V ++TC CP G S
Sbjct: 1   NQYVDSYTCTCPLGFS 16



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 573 VGAFTCRCPWG 605
           +G+++C+CP G
Sbjct: 203 IGSYSCKCPKG 213


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -2

Query: 205 ILYNNVLSMVHRNIPAVFLYFTVFSVN*TDVWKRSLLAI 89
           ILYN +L ++  +  + +LY  + + +   ++K + L I
Sbjct: 43  ILYNIILQVLFVSFVSYWLYLVLEADDMLPIYKNTYLII 81


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -2

Query: 205 ILYNNVLSMVHRNIPAVFLYFTVFSVN*TDVWKRSLLAI 89
           ILYN +L ++  +  + +LY  + + +   ++K + L I
Sbjct: 61  ILYNIILQVLFVSFVSYWLYLVLEADDMLPIYKNTYLII 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,276
Number of Sequences: 336
Number of extensions: 2781
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)